AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
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Nov 18, 2023 - Python
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co1
Here are 8 public repositories matching this topic...
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
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May 24, 2023
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
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Feb 9, 2021 - Perl
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
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Jul 16, 2020 - Perl
Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."
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Dec 20, 2019 - R
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
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Dec 20, 2019 - R
COI sequences files used to test the COI Classifier Web Portal
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Jun 27, 2018
Data flow to process COI metabarcodes
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Jul 16, 2020 - Perl
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