A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
workflow
nanopore
pipeline
nextflow
shotgun
filter
metagenomics
edna
microbiome
fastq
metabarcoding
long-reads
taxonomic-classification
de-identification
nf-core
short-reads
taxonomic-profiling
decontamination
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Updated
Sep 5, 2024 - Nextflow