eigenstrat

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ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files

A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.

plink vcf eigenstrat

Updated Aug 9, 2023
Shell

btmartin721 / phylip2eigenstrat

Star

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

snps rad population-genomics population-genetics admixture hybridization phylip pyrad admixtools eigenstrat ddrad introgression f-statistics d-statistic rad-sequencing ddrad-sequencing geno ind

Updated Apr 12, 2018
Python

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