Fast, flexible and extensible genome browser.

HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

A declarative interactive genomics visualization library for Python.

Documentation website of Gosling

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

HuBMAP Data Portal front end

Python API and Jupyter widget for Vitessce

Code for Gehlenborg Lab website.

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

A minimal Zarr image viewer based on Viv.

Given HuBMAP Dataset JSON, creates a Vitessce configuration

Docker containers to pre-process data for visualization in the portal

R API and htmlwidget for Vitessce

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Repository for covidclinical.net website.

Multivec Tracks for Higlass

Grammar of Scalable Linked Interactive Nucleotide Graphics

Javascript implementation of Zarr

Python client for the Cells API