Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
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Nov 1, 2024 - JavaScript
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hubmap
Here are 17 public repositories matching this topic...
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
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Nov 6, 2024 - JavaScript
HuBMAP Data Portal front end
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Nov 8, 2024 - TypeScript
Weighted Masks Fusion (WMF) - Ensembling for Instance Segmentation.
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Aug 1, 2023 - Python
Utils for loading HuBMAP data formats
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Oct 27, 2021 - Python
Binary segmentation of multi organ tissue units while implementing latest vision transformer architectures
computer-vision
deep-learning
transformers
pytorch
medical-image-segmentation
hubmap
vision-transformers
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Nov 30, 2022 - Python
Glomerular Segmentation of Kidney Images with U-Net
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Nov 24, 2023 - Python
R client to discover and retrieve data on HuBMAP Data Portal
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Nov 3, 2024 - R
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May 11, 2021 - Python
Semantic Segmentation to identify glomeruli in kidney images
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Jun 28, 2021 - Jupyter Notebook
kaggle hubmap kidney segmentation code
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Mar 14, 2021 - Jupyter Notebook
Identify the locations of each functional tissue unit (FTU) in biopsy slides from several different organs.
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May 1, 2023 - Jupyter Notebook
Python utility for converting images to zarr chunked arrays
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Mar 19, 2020 - Python
Style guide for HuBMAP Portal development.
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Feb 2, 2022 - JavaScript
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