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genome-sequence-analysis

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CMU-SAFARI / GenASM

Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis" at https://people.inf.ethz.ch/omutlu/pub/GenASM-approximate-string-matching-framework-for-genome-analys…

approximate-string-matching read-mapping hw-sw-co-design read-alignment bitap-algorithm pre-alignment-filtering genome-sequence-analysis

Updated Dec 19, 2022
C

TomMakesThings / Genome-Sequence-Analysis-HMM

HMM for annotating coding regions of DNA in S. cerevisiae chromosome III

viterbi-algorithm hmm bioinformatics computational-biology hidden-markov-model baum-welch chromosome yeast gc-content forward-algorithm genome-sequence-analysis s-cerevisiae

Updated Oct 16, 2022
Jupyter Notebook

n-shenoy / identify-poor-quality-sequencing-cycles-and-bases

Python bioinformatics project to detect poor quality sequencing cycles and deduce the identity of identified bases.

python bioinformatics fastq jupyter-lab genome-sequence-analysis

Updated Apr 24, 2022
Jupyter Notebook

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