A tool to aggregate and load TB data to Neo4j

parse GFF and output a CSV file for gggenes. 解析并将 gff 中需要的内容输出到 csv 文件中以供 R 包 gggenes 调用。

Plot gene structure

Tools for importing GFF files to a Neo4J graph database

analyzer for phytozome gff files and pacid for genes.

C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.

A web UI for the fungal version of antiSMASH.

A little script to print a gff3 file

This code counts the mapped nucleotide number in given SAM file according to given GFF file.

stitching coding regions from exon alignments for the protein to genome alignments.

Toolkit for handling genome annotations in various formats. Python3.

ease of access gff files from tair for reading tair ids.

Tracks Eukaryotic genome annotations (gff) from NCBI and Ensembl

final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.

This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.

EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format

Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

read VCF and select synonymous or non-synonymous coding variants

💻 Interconverting FASTA, GFF, and CSV.

Micro-libraries for reading and writing genomic sequence data in various formats.