HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.

Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data

Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

Sample size and power for association studies involving mitochondrial DNA haplogroups -

Simple genetic data analysis for GEDKeeper

(WIP) This python script helps you predict your Y-haplogroup offline.

Programa Delfin 2022

Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.

Phylogeographic text-mining platform

Tree Convert helps you to compare ISOGG and YFull haplogroup resolutions

A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods