Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
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Nov 16, 2023 - HTML
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human-genome
Here are 10 public repositories matching this topic...
Transformer-based sequence correction method for genome assembly polishing
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Jun 21, 2024 - Jupyter Notebook
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws
bioinformatics
snakemake
scalable
ec2
ngs
slurm
budgeting
bioinformatics-pipeline
informatics
scaling
cwl
wgs
ephemeral
genomic-data-analysis
human-genome
parallel-cluster
snv-call
giab
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Nov 16, 2024 - WDL
How compressible is a human genome sequence?
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May 15, 2024 - Shell
A Python tool to calculate penetrance tables for high-order epistasis models
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Apr 19, 2022 - Python
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May 18, 2022
A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.
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Jan 11, 2023
Program Structures and Algorithms GENETIC ALGORITHM
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Apr 20, 2019 - Java
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
python
r
jupyter
jupyter-notebook
pandas
python3
ensembl
deseq2
biomart
cancer-research
interactive-data-analysis
acute-myeloid-leukemia
human-genome
human-genomics
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Jul 19, 2023 - Jupyter Notebook
Repository for variant calling utilizing bioinformatics tools and databases
java
bioinformatics
python3
linux-shell
bioinformatics-pipeline
samtools
genome-analysis
bioinformatics-analysis
variant-analysis
ubantu
fastqc
minimap2
bioinformatics-tool
hg38
gatk4
human-genome
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Jul 9, 2024
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