Fulgor is a fast and space-efficient colored de Bruijn graph index.
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Updated
Nov 8, 2024 - C++
#
kmers
Here are 8 public repositories matching this topic...
fast and comprehensive k-mer counting package
hashing
bioinformatics
rcpp
genomics
feature-extraction
protein-sequences
ngram
ngrams
kmer
k-mer
feature-engineering
hashing-algorithms
k-mer-counting
kmer-frequency-count
kmer-counting
rpackage
bioinformatics-tool
kmers
rcppparallel
dna-processing
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Sep 27, 2021 - C++
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
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Updated
Oct 30, 2024 - C++
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences
virus
recombination
subtyping
genotyping
kmers
ancestral-sequences
phylo-kmers
recombination-detection
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Updated
Jan 12, 2021 - C++
reference-free base quality score recalibration
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Oct 16, 2020 - C++
An algorithm for finding SNPs of a long read compared to a reference genome
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Updated
Oct 8, 2023 - C++
Alignment-Free phylogenetic tree construction from .fasta sequence files
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Updated
Jul 22, 2019 - C++
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