Ultrafast Sample Placement on Existing Trees
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Nov 22, 2024 - C++
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maximum-parsimony
Here are 8 public repositories matching this topic...
Tools for analyzing and comparing SARS-CoV-2 phylogenies
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Nov 21, 2020 - C++
Run and compare algorithms for phylogenetic reconciliation and super-reconciliation
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Oct 17, 2024 - Python
McGill University - Computational Biology Methods and Research Project
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Apr 17, 2021 - Python
UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities
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Oct 6, 2021 - Java
Parallel and sequential algorithms for finding philogenetic trees using Maximum Parsimony. The scoring algorithm used is Fitch scoring algorithm. Exhaustive search and Branch and Bound search algorithms are implemented in sequential variant. SPMD method is used in parallel implementation.
matlab parallel branch-and-bound scoring-algorithm exhaustive-search fitch-scoring-algorithm bound-search philogenetic-trees maximum-parsimony
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Oct 2, 2017 - MATLAB
ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony
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Dec 27, 2020 - C
Web App for constructing phylogenetic trees using various clustering methods and algorithms.
phylogenetic-trees phylogenetics evolutionary-algorithms neighbor-joining upgma-clustering distance-matrix maximum-parsimony clustering-trees
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Dec 5, 2024 - HTML
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