Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
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Dec 4, 2024 - Python
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metabolomics
Here are 74 public repositories matching this topic...
A deep learning toolkit for mass spectrometry
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Jul 24, 2024 - Python
A Python 3 implementation of orthogonal projection to latent structures
feature-selection metabolomics chemometrics partial-least-squares-regression orthogonal-signal-correction
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Feb 22, 2024 - Python
In silico chemical library engine for high-accuracy chemical property prediction
molecular-dynamics density-functional-theory computational-chemistry high-performance-computing quantum-chemistry metabolomics ion-mobility chemical-shifts standards-free collision-cross-section
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Dec 12, 2024 - Python
TidyMS: Tools for working with MS data in untargeted metabolomics
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Jul 13, 2024 - Python
CoreMS is a comprehensive mass spectrometry software framework
data-analysis metabolomics mass-spectrometry dissolved-organic-matter metabolomics-pipeline molecular-search molecular-formulae-assignment molecular-database complex-mixture natural-organic-matter soil-organic-matter
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Nov 25, 2024 - Python
Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
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Apr 11, 2023 - Python
Calculation and visualization of molecular networks based on t-SNE algorithm
networking chemistry graph network cosine-similarity metabolomics mass-spectrometry chemoinformatics
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Nov 26, 2024 - Python
(Multiblock) Partial Least Squares Regression for Python
data-science machine-learning bioinformatics supervised-learning data-integration pattern-recognition metabolomics subspace-learning chemometrics multivariate-analysis multivariate-statistics data-fusion
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Jan 14, 2020 - Python
Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
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Oct 17, 2024 - Python
Implementation of PLS-DA and OPLS-DA for high dimensional data, like MS in metabolomics.
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Jun 26, 2024 - Python
pyQms, generalized, fast and accurate mass spectrometry data quantification
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Jun 28, 2024 - Python
National Microbiome Data Collaborative (NMDC) unified data model
metadata schema genomics standards samples proteomics metabolomics microbiome transcriptomics fair-data ecoinformatics nmdc mixs linkml microbiomedata
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Dec 10, 2024 - Python
The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.
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Nov 20, 2024 - Python
IsoCor: Isotope Correction for mass spectrometry labeling experiments
metabolomics mass-spectrometry ms-data isotope fluxomics metabolic-flux-analysis 13c-mfa isotope-labeling-experiments isotope-correction correction-natural-abundance isotopologue-distribution isotopic-inchi
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Nov 8, 2023 - Python
a python package for molecular formula analysis in MS-based small molecule studies
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Dec 10, 2024 - Python
A programmable and modular LC/MS simulator in Python
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Sep 13, 2024 - Python
Workflow for LC-MS feature analysis and spatial mapping
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Jul 16, 2018 - Python
Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
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Jul 6, 2023 - Python
BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
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May 12, 2023 - Python
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