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nextstrain-ncov

Here are 3 public repositories matching this topic...

CDCgov / spheres-augur-build

This repository analyzes viral genomes using Nextstrain to understand how SARS-CoV-2, the virus that is responsible for the COVID-19 pandemic, evolves and spreads. This is a copy of the original Nextstrain ncov repository, which will (by default) build augur all 50 states + DC + PR using the same parameters and subsampling strategy.

workflow spheres nextstrain-ncov

Updated Mar 17, 2022

neherlab / spike-only

Spike-only SARS-CoV-2 Nextstrain build

bioinformatics phylogenetics augur nextstrain sars-cov-2 nextstrain-ncov sars-cov-2-variants

Updated Dec 13, 2023
Python

NIH-BIGVI-PAKISTAN / ncov

Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan

phylogenetics phylogeography phylogenetic-data phylodynamics pakistan-analysis nextstrain-ncov

Updated Nov 25, 2022

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