Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
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Mar 25, 2023 - Python
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peptide-sequences
Here are 22 public repositories matching this topic...
Python framework for Deep Learning in Proteomics
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Dec 13, 2024 - Python
Proteomics Mass Spectrometry Datasets for Machine Learning
spectrum machine-learning deep-learning annotations dataset proteomics mass-spectrometry ptm peptides retention-time peptide-sequences post-translational-modification fragment-ions
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Aug 16, 2024 - Python
A spectacularly simple package for working with peptide sequences.
python bioinformatics protein proteomics mass-spectrometry peptide-identification peptides peptide-sequences
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Jun 3, 2024 - Python
Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams
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May 7, 2020 - Python
Protein Cleaver is a versatile tool for protein analysis and digestion.
protein protein-sequences fasta proteomics mass-spectrometry peptide-identification peptides peptide peptide-sequences digestion streamlit proteomics-data-analysis streamlit-cloud
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Mar 28, 2024 - Python
Script developed to transform the amino acid smiles to one letter code for later analysis
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Feb 25, 2022 - Python
Using Python to locate a peptide sequence to a reference protein and PTM site
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Aug 21, 2019 - Python
A de novo peptide sequencing transformer
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Aug 18, 2022 - Python
Visualize alpha-helical peptide sequences in R using helical wheels and wenxiang diagrams. See https://doi.org/10.21105/joss.01008 for more details.
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Jan 25, 2019 - R
Predict and match digested peptides sequences, their mass m/z and MS/MS spectra with chemical derivatization or post-translational modification.
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Jun 17, 2023 - Julia
A peptide fragment ion calculator made with streamlit
fragment protein proteomics mass-spectrometry peptide-identification peptides peptide-sequences streamlit fragmentation-calculator peptide-modification
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Mar 28, 2024 - Python
Modifications part of the Peptide modifications cycle
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Sep 16, 2022 - Python
Pmlbeta: a PyMOL extension for building β-amino acid insertions and β-peptide sequences. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303678
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Jan 4, 2021 - Python
Python Code for Peptide Sequencing of plasma after Chlorine Exposure
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Feb 10, 2022 - Jupyter Notebook
Locates genomic and peptide sequences for biological analysis.
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Aug 22, 2021 - Python
Miscellaneous Scripts in Bioinformatics
sqlite clinical-trials database-schema clinical-trial-management-system peptide-identification dna-sequences fasta-sequences database-design clinical-data-warehouse peptide-sequences mass-spectrometry-data gz-compression md5-python mgf dna-processing mfg-test sql-cte clinical-trials-retrieval sequence-spectrum
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Oct 17, 2024 - Python
Given files with sequences containing signal peptides and sequences not containing signal peptides, multiple classifiers were tested to see which performs best in the classification of signal peptide sequences.
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Jul 6, 2023 - Python
This is an early stage calculator that uses Python to automate the time-consuming calculation components necessary for solid phase peptide synthesis (SPPS). At its current version (v1), the calculator allows calculation of the molecular weight of a desired peptide sequence, the mass of solid support resin needed for SPPS and the percentage yield
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Jan 11, 2023 - Python
This programs calculates the approximate energy (ATP) required to form a peptide chain
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Feb 9, 2019 - Shell
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