Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.

A Bio2BEL package for converting InterPro to BEL

HMM protein domain prediction

Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.

Brivez is a bioinformatic tool thought as Quality of Life's improvement, providing high quantity of data in a snap, giving you a quick view on what you could find inside your transcriptome/sequences' list.

Using BLAST and Transdecoder.

An R package to identify plant transcription factors from protein sequence data and classify them in families

Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice

Refining Domain Boundaries and Performing Large Scale Parsing

Profile hidden Markov model (HMM) to identify the Kunitz domain in protein sequences, using MSA-guided training and optimization.

THIS PROJECT IS NO LONGER SUPPORTED See Brivez Instead!! https://github.com/furacca/brivez/ - ------------------------------------------ - Cuterle is a bioinformatic tool which return an output file containing every domain annotated by InterProScan via Pfam or SMART analysis from the list of protein submitted.

CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.

Protein sequence domain predictor

UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).

protein domain prediction

Comparison of protein learning

An automated method to map yeast variants to proteins modifications and functional regions

dom2vec: Protein domain embeddings

FAS - Tool for Feature Architecture Similarity calculation

👐 TADOSS: TAndem DOmain Swap Stability predictor