Protein Graph Library

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

A comprehensive library for computational molecular biology

A dependency-free cross-platform swiss army knife for PDB files.

An all-atom protein structure dataset for machine learning.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

macromolecular crystallography library and utilities

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

C-library for calculating Solvent Accessible Surface Areas

Predicting protein structure through sequence modeling

A Python framework for structural systems biology

A curated list of awesome computational cryo-EM methods.

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

VSCode Extension for interactively visualising protein structure data in the editor

A Julia package to read, write and manipulate macromolecular structures

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

The Integrative Modeling Platform

RiboNucleic Acid (RNA) Language Model