Inference code for PoET: A generative model of protein families as sequences-of-sequences
Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024).
Interpretable genotype-phenotype landscape modeling
Augmenting zero-shot mutant prediction by retrieval-based logits fusion.
PyPEF – Pythonic Protein Engineering Framework
Automancer is a software application that enables researchers to design, automate, and manage their experiments.
PyPEF – Pythonic Protein Engineering Framework
Nucleotide augmentation for machine learning-guided protein engineering (https://doi.org/10.1093/bioadv/vbac094, 2022)
PLMFit platform for TL on PLMs
Phage library sequence generator with degenerate basepairs.
Exploring digital signal processing combined with physicochemical properties support by NLP techniques
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