Mask genomic repeats and low-complexity regions for the Scrambling in the Tree of Life project

De novo repeat inference from long reads

Identify and characterize repeat expansions in long read data

Project Job Insights (Python)

This is a tool for finding micro satellites in a chromosome.

Find palindrome/inverted repeats in contigs/scaffolds

De novo repeat inference from long reads

Explore palindromes

Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes

a python package for finding tandem repeats from genomic sequences

A C++ tandem repeat finding library

Some of the mapping and normalization scripts used in our NCB paper PMID:31209294

Transposable Element Subfamily Detection

A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

SLURM-ready bash scripts to run the complete REPET pipeline

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems

A video player component for looping inner sections of video. Packaged as an npm library and cdn script.

An ultrafast tool for genome-wide survey of microsatellites and primer design