Scalable joint species distribution modeling
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Updated
Aug 19, 2024 - R
Scalable joint species distribution modeling
Multi-species size-based ecological modelling in R
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
Explicit Interaction Community Models
Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked
Shiny app to help identify pairwise species interactions occurrences in literature
Meet nestor, an R package for the variational inference of species interaction networks from abundance data, while accounting for missing actors.
A updatet code for the paper Bastazini et al. 2017
Supplement to the paper Queiroz et al. (2020, Biotropica).
Repository of the article: A synthesis of animal-mediated seed dispersal of palms reveals distinct biogeographic differences in species interactions
Host plant-aphid association data from M.E. Palmer's (1952) "Aphids of the Rocky Mountain Region"
Brodie J.E., Helmy O., Mohd-Azlan J., Granados A., Bernard H., Giordano A., and Zipkin E.F. 2018. Models for assessing local-scale co-abundance of animal species while accounting for differential detectability and varied responses to the environment. Biotropica. 50: 5-15.
Supplementary information from Pacelhe et al. 2019 (Biotropica)
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