unique-molecular-identifiers

Here are 4 public repositories matching this topic...

Daniel-Liu-c0deb0t / UMICollapse

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

java data-structures fastq deduplication string-search string-similarity hamming umis unique-molecular-identifiers

Updated Apr 1, 2024
Java

niaid / UMI-pacbio-pipeline

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Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).

pacbio umi pacbio-data network-filtering unique-molecular-identifiers

Updated Sep 25, 2024
Python

sfilges / umiAnalyzer

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Tools for analyzing UMIErrorCorrect output

variant-analysis targeted-sequencing unique-molecular-identifiers

Updated Nov 14, 2022
R

amatov / TumorAgnosticUMI

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scikit-learn clinical-trials lasso-regression colon-cancer blacklisting-filter unique-molecular-identifiers fragmentomics rectal-cancer limit-of-detection colon-adenoma rectal-adenoma detect-recurrence predict-relapse ultra-deep-sequencing tumor-agnostic-approach error-rates mutation-score dna-fragmentation-patterns detection-error-rates sensitivity-specificity

Updated Nov 26, 2023
R

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unique-molecular-identifiers

Here are 4 public repositories matching this topic...

Daniel-Liu-c0deb0t / UMICollapse

niaid / UMI-pacbio-pipeline

sfilges / umiAnalyzer

amatov / TumorAgnosticUMI

Improve this page

Add this topic to your repo