Create Dockerfile

4.0c

misc/Legacy/4.0c/Dockerfile

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+FROM ubuntu:22.04
+
+MAINTAINER TReNDS Center Cyrus Eierud <ceierud@gsu.edu>
+
+# Initiation of system
+RUN apt-get update -y \
+ && apt-get install wget unzip libxext-dev libxt-dev libxmu-dev libglu1-mesa-dev libxrandr-dev -y \
+ && mkdir -p /tmp_mcr \
+ && cd /tmp_mcr \
+ && wget https://ssd.mathworks.com/supportfiles/downloads/R2016b/deployment_files/R2016b/installers/glnxa64/MCR_R2016b_glnxa64_installer.zip \
+ && wget https://ssd.mathworks.com/supportfiles/downloads/R2016b/deployment_files/R2016b/installers/glnxa64/MCR_R2016b_Update_6_glnxa64.sh \
+ && unzip MCR_R2016b_glnxa64_installer.zip \
+ && ./install -destinationFolder /usr/local/MATLAB/MATLAB_Runtime/ -mode silent -agreeToLicense yes \
+ && chmod +x MCR_R2016b_Update_6_glnxa64.sh \
+ && ./MCR_R2016b_Update_6_glnxa64.sh \
+ && mkdir -p /app \ 
+ && rm -rf /tmp_mcr \
+ && wget -P /app https://trends-public-website-fileshare.s3.amazonaws.com/public_website_files/software/gift/software/bids/groupica
+# groupica is compiled using MATLAB version R2016b.
+
+# Environment variables
+ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/x86_64-linux-gnu/:/usr/local/MATLAB/MATLAB_Runtime/v91/:/usr/local/MATLAB/MATLAB_Runtime/v91/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/v91/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/v91/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/v91/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/MATLAB/MATLAB_Runtime/v91/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/MATLAB/MATLAB_Runtime/v91/sys/java/jre/glnxa64/jre/lib/amd64
+ENV XAPPLRESDIR=/usr/local/MATLAB/MATLAB_Runtime/v91/X11/app-defaults
+ENV MCR_CACHE_VERBOSE=true
+ENV MCR_CACHE_ROOT=/tmp
+ENV PATH=$PATH:/app:
+ENV MATLAB_VER=R2016b
+ENV GICA_VER=v4.0c
+ENV GICA_INSTALL_DIR=/app/
+
+# Building entrypoint
+COPY run.sh gica_bids_app.m /app/
+WORKDIR /app
+RUN chmod +x /app/groupica
+ENTRYPOINT ["/app/run.sh"]