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Help for installing dependencies
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tseemann committed Nov 19, 2015
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#mlst

Scan contig files against PubMLST typing schemes.

_By Torsten Seemann | [@torstenseemann](https://twitter.com/torstenseemann) | [blog](http://thegenomefactory.blogspot.com/)_
Scan contig files against PubMLST typing schemes - Torsten Seemann | [@torstenseemann](https://twitter.com/torstenseemann) | [blog](http://thegenomefactory.blogspot.com/)

##Quick Start

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% cd $HOME
% git clone https://github.com/tseemann/mlst.git

The only external dependency is [NCBI BLAST+ blastn](https://www.ncbi.nlm.nih.gov/books/NBK279671/).
Most bioinformatics computers should have `blastn` already installed.
###Dependencies
* [NCBI BLAST+ blastn](https://www.ncbi.nlm.nih.gov/books/NBK279671/)
* You probably have `blastn` already installed already.
* Perl modules *Moo* and *List::MoreUtils*
* Debian: `sudo apt-get install libmoo-perl liblist-moreutils-perl`
* Redhat: `sudo apt-get install perl-Moo perl-List-MoreUtils`
* Most Unix: `sudo cpan Moo List::MoreUtils`

##Usage

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