LOH_FRAC redefined

LOH_FRAC_MAX = 0.11 to LOH_FRAC_MAX = 0.25
'--baseline_thred', default=0.09 to '--baseline_thred', default=0.16

now the same as PyLOH

fixing slowness in pysam_0.8.X

bqual = read.alignment.query_qualities[qpos] added

bug fixed in data.py, utils.py

1.1.4

mixclone/preprocess/data.py, mixclone/preprocess/utils.py: chrom_idxs…

bug fixed in plotting BAF heatmap

Update run_postprocess.py

vmax = max(1, color_max_j)

Pysam_0.8X supported

fix the read.qpos => read.query_position change from Pysam_0.7X to Pysam_0.8X

subclone_num > 5 supported

1.1.1

Update README.md

matplotlib is now optional

matplotlib is now optional;
remove_outliers bug fixed.

initial release

On branch master

README.md added