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Changed the get_ext file extension returning logic. #8

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Changed the get_ext file extension returning logic. #8

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69aef61
Fixed get_ext()
Ayoob7 Mar 9, 2019
47815f4
Merge pull request #1 from Ayoob7/fix_Get_ext
Ayoob7 Mar 9, 2019
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15 changes: 9 additions & 6 deletions gdc.py
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@
import requests

GDC_API_BASE = 'https://api.gdc.cancer.gov'
_SUPPORTED_FILE_TYPES = {'txt', 'vcf', 'bam', 'tsv', 'xml', 'maf', 'xlsx',
_RECOGNIZED_FILE_TYPES = {'txt', 'vcf', 'bam', 'tsv', 'xml', 'maf', 'xlsx',
'tar', 'gz', 'md5', 'xls'}
_SUPPORTED_DATASETS = [
{'data_type': 'Copy Number Segment'},
Expand Down Expand Up @@ -260,11 +260,14 @@ def get_ext(file_name):
"""

# https://github.com/broadinstitute/gdctools/blob/master/gdctools/lib/meta.py
name_list = file_name.split('.')
for i in range(len(name_list)):
if name_list[i] in _SUPPORTED_FILE_TYPES:
break
return '.'.join(name_list[i:])
return_list = []
ext_list = file_name[file_name.find(".") + 1:len(file_name)].split(".")
for ext in ext_list:
if ext in _RECOGNIZED_FILE_TYPES:
return_list.append(ext)
if len(return_list) > 0:
return ".".join(return_list)
return ext_list[-1]


def mkdir_p(dir_name):
Expand Down