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Incorporate high-res global VIIRS vegetation data. #699

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Oct 19, 2022
Merged

Incorporate high-res global VIIRS vegetation data. #699

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eee78ec
Update script comments for new viirs data.
GeorgeGayno-NOAA Oct 3, 2022
03c5790
Rename the high-res files with more accurate '30s' label.
GeorgeGayno-NOAA Oct 3, 2022
daa3f67
Update README.md
GeorgeGayno-NOAA Oct 4, 2022
17fe3f9
Update the readthedocs.
GeorgeGayno-NOAA Oct 4, 2022
9b0c111
Adjust memory in ./driver_scripts/driver_grid.wcoss2.sh
GeorgeGayno-NOAA Oct 13, 2022
7e979df
Merge branch 'develop' into feature/viirs_veg
GeorgeGayno-NOAA Oct 14, 2022
bf1f3fe
Merge branch 'develop' into feature/viirs_veg
GeorgeGayno-NOAA Oct 14, 2022
b8ae8c1
Update link_fixdirs.sh for new sfc_climo directory.
GeorgeGayno-NOAA Oct 17, 2022
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10 changes: 5 additions & 5 deletions README.md
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Expand Up @@ -2,7 +2,7 @@
# UFS_UTILS

Utilities for the NCEP models. This is part of the
[NCEPLIBS](https://github.com/NOAA-EMC/NCEPLIBS) project.
[Unified Forecast System](https://github.com/ufs-community) project.

Documentation for chgres_cube and other utilities can be found at
https://noaa-emcufs-utils.readthedocs.io/en/latest/.
Expand All @@ -22,14 +22,14 @@ fre-nctools | GFDL progammer
fvcom_tools | David Wright, University of Michigan, Ming Hu, GSD/AMB
gblevents | Hang Lei
gdas_init | George Gayno
global_cycle | George Gayno, Shrinivas Moorthi, Mark Iredell, Xu Li, Hang Lei
grid_tools | R. J. Purser (regional_esg_grid), Tom Black/Ben Blake (shave.fd), Gerard Ketefian (global_equiv_resol), Tsukasa Fujita, JMA (pmat2), GFDL programmer (topo filtering code).
global_cycle | George Gayno, Shrinivas Moorthi, Xu Li
grid_tools | R. J. Purser (regional_esg_grid), Ben Blake (shave.fd), Gerard Ketefian (global_equiv_resol), Tsukasa Fujita, JMA (pmat2), GFDL programmer (topo filtering code).
orog_mask_tools | Ning Wang, Jordan Alpert, Shan Sun and Ning Wang
sfc_climo_gen | George Gayno
vcoord_gen | Fanglin Yang, Mark Iredell
vcoord_gen | Fanglin Yang
weight_gen | George Gayno

UFS_UTILS Code managers: George Gayno, Kyle Gerheiser, Jeff Beck, Larissa Reames
UFS_UTILS Code managers: George Gayno, Jeff Beck, Larissa Reames

## Prerequisites

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4 changes: 3 additions & 1 deletion docs/source/ufs_utils.rst
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Expand Up @@ -532,10 +532,12 @@ The surface climatological data is located here `./fix/fix_sfc_climo <https://no
* MODIS-based global 0.03-degree - vegetation_type.modis.igbp.0.03.nc
* MODIS-based global 0.05-degree - vegetation_type.modis.igbp.0.05.nc
* MODIS-based CONUS 0.01-degree - vegetation_type.modis.igbp.conus.0.01.nc
* NESDIS VIIRS-based global 30-second - vegetation_type.viirs.igbp.30s.nc
* NESDIS VIIRS-based global 0.03-degree - vegetation_type.viirs.igbp.0.03.nc
* NESDIS VIIRS-based global 0.05-degree - vegetation_type.viirs.igbp.0.05.nc
* NESDIS VIIRS-based global 0.1-degree - vegetation_type.viirs.igbp.0.1.nc
* NESDIS VIIRS-based CONUS 0.01-degree - vegetation_type.viirs.igbp.conus.0.01.nc
* NESDIS VIIRS-based N HEMIS 30-second - vegetation_type.viirs.igbp.nh.30s.nc
* NESDIS VIIRS-based CONUS 30-second - vegetation_type.viirs.igbp.conus.30s.nc
* Global 0.144-degree monthly vegetation greenness in percent - vegetation_greenness.0.144.nc

The files that define the model grid. All NetCDF.
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6 changes: 4 additions & 2 deletions driver_scripts/driver_grid.hera.sh
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Expand Up @@ -80,11 +80,13 @@ export veg_type_src="modis.igbp.0.05" # veg type data.
# 1) "viirs.igbp.0.05" for global 5km data
# 2) "viirs.igbp.0.1" for global 10km data
# 3) "viirs.igbp.0.03" for global 3km data
# 4) "viirs.igbp.conus.0.01" for regional 1km data
# 4) "viirs.igbp.30s" for global 30s data
# 5) "viirs.igbp.conus.30s" for CONUS 30s data
# 6) "viirs.igbp.nh.30s" for NH 30s data
# For the modis-based data, set to:
# 1) "modis.igbp.0.05" for global 5km data
# 2) "modis.igbp.0.03" for global 3km data
# 3) "modis.igbp.conus.0.01" for regional 1km data
# 3) "modis.igbp.conus.30s" for regional 30s data

if [ $gtype = uniform ]; then
export res=96
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6 changes: 4 additions & 2 deletions driver_scripts/driver_grid.jet.sh
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Expand Up @@ -80,11 +80,13 @@ export veg_type_src="modis.igbp.0.05" # veg type data.
# 1) "viirs.igbp.0.05" for global 5km data
# 2) "viirs.igbp.0.1" for global 10km data
# 3) "viirs.igbp.0.03" for global 3km data
# 4) "viirs.igbp.conus.0.01" for regional 1km data
# 4) "viirs.igbp.30s" for global 30s data
# 5) "viirs.igbp.conus.30s" for CONUS 30s data
# 6) "viirs.igbp.nh.30s" for NH 30s data
# For the modis-based data, set to:
# 1) "modis.igbp.0.05" for global 5km data
# 2) "modis.igbp.0.03" for global 3km data
# 3) "modis.igbp.conus.0.01" for regional 1km data
# 3) "modis.igbp.conus.30s" for regional 30s data

if [ $gtype = uniform ]; then
export res=96
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6 changes: 4 additions & 2 deletions driver_scripts/driver_grid.orion.sh
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Expand Up @@ -81,11 +81,13 @@ export veg_type_src="modis.igbp.0.05" # veg type data.
# 1) "viirs.igbp.0.05" for global 5km data
# 2) "viirs.igbp.0.1" for global 10km data
# 3) "viirs.igbp.0.03" for global 3km data
# 4) "viirs.igbp.conus.0.01" for regional 1km data
# 4) "viirs.igbp.30s" for global 30s data
# 5) "viirs.igbp.conus.30s" for CONUS 30s data
# 6) "viirs.igbp.nh.30s" for NH 30s data
# For the modis-based data, set to:
# 1) "modis.igbp.0.05" for global 5km data
# 2) "modis.igbp.0.03" for global 3km data
# 3) "modis.igbp.conus.0.01" for regional 1km data
# 3) "modis.igbp.conus.30s" for regional 30s data

if [ $gtype = uniform ]; then
export res=96
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12 changes: 7 additions & 5 deletions driver_scripts/driver_grid.wcoss2.sh
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Expand Up @@ -6,7 +6,7 @@
#PBS -A GFS-DEV
#PBS -l walltime=00:15:00
#PBS -N make_grid
#PBS -l select=1:ncpus=24:mem=100GB
#PBS -l select=1:ncpus=24:mem=200GB

#-----------------------------------------------------------------------
# Driver script to create a cubic-sphere based model grid on WCOSS2.
Expand Down Expand Up @@ -69,7 +69,7 @@ module list
# Set grid specs here.
#-----------------------------------------------------------------------

export gtype=uniform # 'uniform', 'stretch', 'nest',
export gtype=regional_esg # 'uniform', 'stretch', 'nest',
# 'regional_gfdl', 'regional_esg'
export make_gsl_orog=false # 'true' if user needs 'oro' files for GSL
# orographic drag suite
Expand All @@ -78,11 +78,13 @@ export veg_type_src="modis.igbp.0.05" # veg type data.
# 1) "viirs.igbp.0.05" for global 5km data
# 2) "viirs.igbp.0.1" for global 10km data
# 3) "viirs.igbp.0.03" for global 3km data
# 4) "viirs.igbp.conus.0.01" for regional 1km data
# 4) "viirs.igbp.30s" for global 30s data
# 5) "viirs.igbp.conus.30s" for CONUS 30s data
# 6) "viirs.igbp.nh.30s" for NH 30s data
# For the modis-based data, set to:
# 1) "modis.igbp.0.05" for global 5km data
# 2) "modis.igbp.0.03" for global 3km data
# 3) "modis.igbp.conus.0.01" for regional 1km data
# 3) "modis.igbp.conus.30s" for regional 30s data

if [ $gtype = uniform ]; then
export res=96
Expand All @@ -109,7 +111,7 @@ elif [ $gtype = nest ] || [ $gtype = regional_gfdl ]; then
elif [ $gtype = regional_esg ] ; then
export res=-999 # equivalent resolution is computed
export target_lon=-97.5 # Center longitude of grid
export target_lat=35.5 # Center latitude of grid
export target_lat=35.0 # Center latitude of grid
export idim=301 # Dimension of grid in 'i' direction
export jdim=200 # Dimension of grid in 'j' direction
export delx=0.0585 # Grid spacing (in degrees) in the 'i' direction
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2 changes: 1 addition & 1 deletion fix/link_fixdirs.sh
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Expand Up @@ -50,7 +50,7 @@ fi

am_ver=${am_ver:-20220805}
orog_ver=${orog_ver:-20220805}
sfc_climo_ver=${sfc_climo_ver:-20220805}
sfc_climo_ver=${sfc_climo_ver:-20221017}

for dir in am orog sfc_climo; do
if [ -d $dir ]; then
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7 changes: 5 additions & 2 deletions util/sfc_climo_gen/run.wcoss2.sh
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Expand Up @@ -53,8 +53,11 @@ export FIX_FV3=${BASE_DIR}/fix/orog/C${res}
export veg_type_src="viirs.igbp.0.05" # Use global 0.05-degree viirs data
#export veg_type_src="viirs.igbp.0.1" # Use global 0.1-degree viirs data
#export veg_type_src="viirs.igbp.0.03" # Use global 0.03-degree viirs data
#export veg_type_src="viirs.igbp.conus.0.01" # Use CONUS 0.01-degree virrs data. Do not
# use for global grids.
#export veg_type_src="viirs.igbp.30s" # Use global 30s viirs data
#export veg_type_src="viirs.igbp.nh.30s" # Use NH 30s virrs data. Do not
# use for global grids.
#export veg_type_src="viirs.igbp.conus.30s" # Use CONUS 30s virrs data. Do not
# use for global grids or N Amer grids.

#-------------------------------------
# Set working directory and directory where output files will be saved.
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