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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 39 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 8 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    Python 4

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 128 repositories
  • orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    umccr/orcabus’s past year of commit activity
    Python 4 0 45 (1 issue needs help) 6 Updated Nov 10, 2024
  • v2-samplesheet-maker Public

    Generate V2 SampleSheets from JSON Inputs

    umccr/v2-samplesheet-maker’s past year of commit activity
    Python 4 MIT 0 0 1 Updated Nov 10, 2024
  • dracarys Public

    🐲 DRAGEN workflow tidying 🔥

    umccr/dracarys’s past year of commit activity
    R 0 0 24 1 Updated Nov 8, 2024
  • orca-ui Public
    umccr/orca-ui’s past year of commit activity
    TypeScript 0 MIT 0 13 (1 issue needs help) 3 Updated Nov 8, 2024
  • infrastructure Public

    Infrastructure as Code at UMCCR

    umccr/infrastructure’s past year of commit activity
    Python 10 8 13 7 Updated Nov 8, 2024
  • cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    umccr/cwl-ica’s past year of commit activity
    Common Workflow Language 8 MIT 2 4 2 Updated Nov 8, 2024
  • RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    umccr/RNAsum’s past year of commit activity
    R 7 4 16 0 Updated Nov 8, 2024
  • illumination Public

    🔆 Interacting with Illumina Connected Analytics (ICA) API

    umccr/illumination’s past year of commit activity
    EJS 3 2 1 1 Updated Nov 8, 2024
  • cwl-ica-cli Public

    The CLI used for creating/syncing CWL workflows from GitHub to ICAv1

    umccr/cwl-ica-cli’s past year of commit activity
    Python 1 MIT 0 10 0 Updated Nov 6, 2024
  • htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    umccr/htsget-rs’s past year of commit activity
    Rust 39 MIT 9 19 5 Updated Nov 6, 2024
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