v0.8.0

0.8.0 (2024-06-03)

Changed

• ❗ Renamed the clinlp_entity_matcher to clinlp_rule_based_entity_matcher
• ❗ clinlp now stores entities in doc.spans['ents'] rather than doc.ents, allowing for overlap
  • ❗ Overlap in entities found by the entity matcher is no longer resolved by default (replacing old behaviour). To remove overlap, pass resolve_overlap=True.
• Refactored tests to use pytest best practices
• Changed clinlp_autocomponent to clinlp_component, which automatically registers your component with spaCy
• Codebase and linting improvements
• Renamed the other_threshold config to family_threshold in the clinlp_experiencer_transformer component

Fixed

• The clinlp_rule_based_entity_matcher no longer overwrites entities detected by other components (but appends them)