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qinstall on BlueGene/Q #1

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lcosmai opened this issue Feb 14, 2016 · 8 comments
Open

qinstall on BlueGene/Q #1

lcosmai opened this issue Feb 14, 2016 · 8 comments

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@lcosmai
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lcosmai commented Feb 14, 2016

I tried to install SciDAC libraries on a IBM BlueGene/Q (RedHat EL 6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:
https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing
)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.
@jcosborn
Copy link
Member

Your QMP seems to be configured to use bgxlc_r instead of mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q (RedHat EL 6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:
https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing
)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

—
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#1.

@lcosmai
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Author

lcosmai commented Feb 14, 2016

Hi James,

thanks for your prompt answer.

I used:

qmp=bgq-mpixlc

in bgq.prf to install QMP

with bgq-mpixlc:

SRCDIR/configure
--prefix=INSDIR
--with-qmp-comms-type=MPI
--host=powerpc64-bgq-linux
CC="mpixlc_r"
CFLAGS="-O3 -qinfo=pro -g"

Leonardo

On 2/14/16 9:30 AM, jcosborn wrote:

Your QMP seems to be configured to use bgxlc_r instead of mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q (RedHat EL 6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:

https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing
)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

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Reply to this email directly or view it on GitHub
#1.

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#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

@jcosborn
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Member

For some reason it didn't use mpixlc_r. Can you post the output of
config.log for the QMP build?

-James

On 02/14/2016 04:02 AM, lcosmai wrote:

Hi James,

thanks for your prompt answer.

I used:

qmp=bgq-mpixlc

in bgq.prf to install QMP

with bgq-mpixlc:

SRCDIR/configure
--prefix=INSDIR
--with-qmp-comms-type=MPI
--host=powerpc64-bgq-linux
CC="mpixlc_r"
CFLAGS="-O3 -qinfo=pro -g"

Leonardo

On 2/14/16 9:30 AM, jcosborn wrote:

Your QMP seems to be configured to use bgxlc_r instead of mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q (RedHat EL
6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:

https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing

)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

—
Reply to this email directly or view it on GitHub
#1.

—
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#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub
#1 (comment).

@lcosmai
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Author

lcosmai commented Feb 14, 2016

I shared all the installation tree on:

https://drive.google.com/folderview?id=0BxE4mI8SH7wsaEx4OUxjb2l4dTQ&usp=sharing

The config.log for QMP is also posted on:

https://drive.google.com/file/d/0BxE4mI8SH7wscmFpMXlHYWFuZ0E/view?usp=sharing

Leonardo

On 2/14/16 6:37 PM, jcosborn wrote:

For some reason it didn't use mpixlc_r. Can you post the output of
config.log for the QMP build?

-James

On 02/14/2016 04:02 AM, lcosmai wrote:

Hi James,

thanks for your prompt answer.

I used:

qmp=bgq-mpixlc

in bgq.prf to install QMP

with bgq-mpixlc:

SRCDIR/configure
--prefix=INSDIR
--with-qmp-comms-type=MPI
--host=powerpc64-bgq-linux
CC="mpixlc_r"
CFLAGS="-O3 -qinfo=pro -g"

Leonardo

On 2/14/16 9:30 AM, jcosborn wrote:

Your QMP seems to be configured to use bgxlc_r instead of
mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q (RedHat EL
6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:

https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing

)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

—
Reply to this email directly or view it on GitHub
#1.

—
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#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

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#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

@jcosborn
Copy link
Member

It should be using mpixlc_r. Can you do "which mpixlc_r" to see what it
is calling? Maybe you have an alias or symbolic link pointing to bgxlc_r?

Cheers,
James

On 02/14/2016 12:11 PM, lcosmai wrote:

I shared all the installation tree on:

https://drive.google.com/folderview?id=0BxE4mI8SH7wsaEx4OUxjb2l4dTQ&usp=sharing

The config.log for QMP is also posted on:

https://drive.google.com/file/d/0BxE4mI8SH7wscmFpMXlHYWFuZ0E/view?usp=sharing

Leonardo

On 2/14/16 6:37 PM, jcosborn wrote:

For some reason it didn't use mpixlc_r. Can you post the output of
config.log for the QMP build?

-James

On 02/14/2016 04:02 AM, lcosmai wrote:

Hi James,

thanks for your prompt answer.

I used:

qmp=bgq-mpixlc

in bgq.prf to install QMP

with bgq-mpixlc:

SRCDIR/configure
--prefix=INSDIR
--with-qmp-comms-type=MPI
--host=powerpc64-bgq-linux
CC="mpixlc_r"
CFLAGS="-O3 -qinfo=pro -g"

Leonardo

On 2/14/16 9:30 AM, jcosborn wrote:

Your QMP seems to be configured to use bgxlc_r instead of
mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q (RedHat EL
6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:

https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing

)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

—
Reply to this email directly or view it on GitHub
#1.

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
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#1 (comment).

@lcosmai
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Author

lcosmai commented Feb 16, 2016

When I do "which mpixlc_r", I get:

[lcosmai0@fen08 ~]$ which mpixlc_r
/bgsys/drivers/ppcfloor/comm/bin/xl.ndebug/mpixlc_r

It seems that it points correctly to mpixlc_r.

Cheers,
Leonardo

On 15/02/16 19:31, jcosborn wrote:

It should be using mpixlc_r. Can you do "which mpixlc_r" to see what it
is calling? Maybe you have an alias or symbolic link pointing to bgxlc_r?

Cheers,
James

On 02/14/2016 12:11 PM, lcosmai wrote:

I shared all the installation tree on:

https://drive.google.com/folderview?id=0BxE4mI8SH7wsaEx4OUxjb2l4dTQ&usp=sharing

The config.log for QMP is also posted on:

https://drive.google.com/file/d/0BxE4mI8SH7wscmFpMXlHYWFuZ0E/view?usp=sharing

Leonardo

On 2/14/16 6:37 PM, jcosborn wrote:

For some reason it didn't use mpixlc_r. Can you post the output of
config.log for the QMP build?

-James

On 02/14/2016 04:02 AM, lcosmai wrote:

Hi James,

thanks for your prompt answer.

I used:

qmp=bgq-mpixlc

in bgq.prf to install QMP

with bgq-mpixlc:

SRCDIR/configure
--prefix=INSDIR
--with-qmp-comms-type=MPI
--host=powerpc64-bgq-linux
CC="mpixlc_r"
CFLAGS="-O3 -qinfo=pro -g"

Leonardo

On 2/14/16 9:30 AM, jcosborn wrote:

Your QMP seems to be configured to use bgxlc_r instead of
mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q
(RedHat EL
6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:

https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing

)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

—
Reply to this email directly or view it on GitHub
#1.

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub
#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

@jcosborn
Copy link
Member

I'm don't know what's happening. The only thing I can think of is to
add 'CC="mpixlc_r" ' to the QIO configure command (like in QMP) to see
if that helps.

Cheers,
James

On 02/16/2016 02:44 AM, lcosmai wrote:

When I do "which mpixlc_r", I get:

[lcosmai0@fen08 ~]$ which mpixlc_r
/bgsys/drivers/ppcfloor/comm/bin/xl.ndebug/mpixlc_r

It seems that it points correctly to mpixlc_r.

Cheers,
Leonardo

On 15/02/16 19:31, jcosborn wrote:

It should be using mpixlc_r. Can you do "which mpixlc_r" to see what it
is calling? Maybe you have an alias or symbolic link pointing to bgxlc_r?

Cheers,
James

On 02/14/2016 12:11 PM, lcosmai wrote:

I shared all the installation tree on:

https://drive.google.com/folderview?id=0BxE4mI8SH7wsaEx4OUxjb2l4dTQ&usp=sharing

The config.log for QMP is also posted on:

https://drive.google.com/file/d/0BxE4mI8SH7wscmFpMXlHYWFuZ0E/view?usp=sharing

Leonardo

On 2/14/16 6:37 PM, jcosborn wrote:

For some reason it didn't use mpixlc_r. Can you post the output of
config.log for the QMP build?

-James

On 02/14/2016 04:02 AM, lcosmai wrote:

Hi James,

thanks for your prompt answer.

I used:

qmp=bgq-mpixlc

in bgq.prf to install QMP

with bgq-mpixlc:

SRCDIR/configure
--prefix=INSDIR
--with-qmp-comms-type=MPI
--host=powerpc64-bgq-linux
CC="mpixlc_r"
CFLAGS="-O3 -qinfo=pro -g"

Leonardo

On 2/14/16 9:30 AM, jcosborn wrote:

Your QMP seems to be configured to use bgxlc_r instead of
mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q
(RedHat EL
6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:

https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing

)

Note that I installed successfully QMP, QIO, QLA, QDP, QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

—
Reply to this email directly or view it on GitHub
#1.

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

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#1 (comment).

@lcosmai
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lcosmai commented Feb 17, 2016

After adding
CC="mpixlc_r"
before
CFLAGS="-O3 -qinfo=pro -g -DHAVE_BGL"
to the automatically generated configure command file
$rootdir/build/qio-2.4.2/configure-qio
the compilation of qio-2.4.2 has been successful.

In order to compile qla-1.9.0 I have also modified the
configure command
$rootdir/build/qla-1.9.0/configure-qla
by removing tmpwrap in CC="tmpwrap bgxlc_r" \

The compilation of qdp-1.11.1 and qopqdp-0.20.1 was successful
without any modification of the automatically generated configure commands.

Thanks a lot for your support.

Cheers,
Leonardo

On 16/02/16 16:10, jcosborn wrote:

I'm don't know what's happening. The only thing I can think of is to
add 'CC="mpixlc_r" ' to the QIO configure command (like in QMP) to see
if that helps.

Cheers,
James

On 02/16/2016 02:44 AM, lcosmai wrote:

When I do "which mpixlc_r", I get:

[lcosmai0@fen08 ~]$ which mpixlc_r
/bgsys/drivers/ppcfloor/comm/bin/xl.ndebug/mpixlc_r

It seems that it points correctly to mpixlc_r.

Cheers,
Leonardo

On 15/02/16 19:31, jcosborn wrote:

It should be using mpixlc_r. Can you do "which mpixlc_r" to see
what it
is calling? Maybe you have an alias or symbolic link pointing to
bgxlc_r?

Cheers,
James

On 02/14/2016 12:11 PM, lcosmai wrote:

I shared all the installation tree on:

https://drive.google.com/folderview?id=0BxE4mI8SH7wsaEx4OUxjb2l4dTQ&usp=sharing

The config.log for QMP is also posted on:

https://drive.google.com/file/d/0BxE4mI8SH7wscmFpMXlHYWFuZ0E/view?usp=sharing

Leonardo

On 2/14/16 6:37 PM, jcosborn wrote:

For some reason it didn't use mpixlc_r. Can you post the output of
config.log for the QMP build?

-James

On 02/14/2016 04:02 AM, lcosmai wrote:

Hi James,

thanks for your prompt answer.

I used:

qmp=bgq-mpixlc

in bgq.prf to install QMP

with bgq-mpixlc:

SRCDIR/configure
--prefix=INSDIR
--with-qmp-comms-type=MPI
--host=powerpc64-bgq-linux
CC="mpixlc_r"
CFLAGS="-O3 -qinfo=pro -g"

Leonardo

On 2/14/16 9:30 AM, jcosborn wrote:

Your QMP seems to be configured to use bgxlc_r instead of
mpixlc_r. How
did you install that?

-James

On 02/14/2016 01:43 AM, lcosmai wrote:

I tried to install SciDAC libraries on a IBM BlueGene/Q
(RedHat EL
6.2),
using qinstall and bgq.prf
I firstly installed QMP:
./qinstall bgq qmp 2.5.0
the installation of QMP was successful.
But the tentative of installing QIO:
./qinstall bgq qio 2.4.2
terminated with the following error:
..........
checking if we can compile/link of a simple QMP C
program... no
configure: error: Cannot compile/link a basic QMP C program!
Check QMP_CFLAGS, QMP_LDFLAGS, QMP_LIBS.
error: can't configure package
..........
(for the complete log see:

https://drive.google.com/file/d/0BxE4mI8SH7wsbjg1bkVXUlJLZEU/view?usp=sharing

)

Note that I installed successfully QMP, QIO, QLA, QDP,
QOPQDP
on a desktop running Mac OS X 10.11.3
and on a NeXtScale cluster (running CentOS 7.0)
using qinstall anf core2.prf.

—
Reply to this email directly or view it on GitHub
#1.

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub

#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

—
Reply to this email directly or view it on GitHub

#1 (comment).

—
Reply to this email directly or view it on GitHub
#1 (comment).

Leonardo Cosmai
INFN Bari
Via Amendola 173
70126 Bari - Italy
office: +39 080 5443207
mobile: +39 340 3580207

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