fix issue with images not placed

vanheeringen-lab · Jun 9, 2020 · d421ce6 · d421ce6
1 parent d4b79ab
commit d421ce6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/docs/scripts/gen_dags b/docs/scripts/gen_dags
@@ -4,7 +4,7 @@ for f in seq2science/workflows/*; do
     (
     if [ -d "$f" ]; then
         cd "$dir/$f"
-        snakemake --quiet --rulegraph | dot -Tpng -Gbgcolor=transparent -Gdpi=600 > "$dir/docs/resources/$(basename $f).png"
+        snakemake --configfile config.yaml --config rule_dir="${dir}/seq2science/rules" --quiet --rulegraph | dot -Tpng -Gbgcolor=transparent -Gdpi=600 > "$dir/docs/resources/$(basename $f).png"
     fi
     )
 done