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BUG: scATAC breaks after seq2science transition: KeyError snaptools_opt #363

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siebrenf opened this issue Jun 4, 2020 · 0 comments
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BUG: scATAC breaks after seq2science transition: KeyError snaptools_opt #363

siebrenf opened this issue Jun 4, 2020 · 0 comments
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@Maarten-vd-Sande
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siebrenf commented Jun 4, 2020

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@siebrenf siebrenf added the bug Something isn't working label Jun 4, 2020
@Maarten-vd-Sande Maarten-vd-Sande self-assigned this Jun 4, 2020
Maarten-vd-Sande added a commit that referenced this issue Jun 4, 2020
@Maarten-vd-Sande
fix #363, #351
55b04c9
siebrenf added a commit that referenced this issue Jun 9, 2020
@Maarten-vd-Sande @siebrenf
use seq2science instead of snakemake (#373)
8dd5d56 
* fix #363, #351

* s2s can now accept lists are options input, e.g.: --snakemakeOptions until=[get_genome].

* allow @ symbol on Jenkins

* all tests now use the seq2science wrapper

Co-authored-by: siebrenf <48289046+siebrenf@users.noreply.github.com>
Co-authored-by: siebrenf <siebrenf@gmail.com>
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@Maarten-vd-Sande @siebrenf