Upgrade DeepCell to 0.9.2 and set up CI/CD workflows #14
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willgraf
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willgraf
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ngreenwald
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Aug 11, 2021
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Looks awesome! I was able to get it working purely by reading documentation, and the input sanitization provided great error messages for the stuff I mistyped initially.
Also did some testing of other bad args intentionally, failed gracefully for all of them.
ngreenwald
approved these changes
Aug 12, 2021
Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>
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deepcell-tf:0.9.2-gpuMesmerapplication name instead of deprecatedMultiplexSegmentationget_imageimports (Fixes AttributeError: module 'deepcell.utils' has no attribute 'get_image' #12)deepcell_applicationsmodule with tests for re-usable components (Fixes Improvements to the application #15)mesmer) is required.--nuclear-channeland--membrane-channelto the Mesmer arguments which allow 1 or more channels to be declared. Each channel is selected and summed from the respective image. (Fixes Add support for multi-channel .ome.tiff #13)