Update example notebooks #256
elaubsch
This run and associated checks have been archived and are scheduled for deletion.
Learn more about checks retention
release-drafter.yaml
on: pull_request
update_release_draft
6s
Annotations
2 errors
|
update_release_draft
Validation Failed: {"resource":"Release","code":"invalid","field":"target_commitish"}
{
name: 'HttpError',
id: '5662270705',
status: 422,
response: {
url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/releases/79204730',
status: 422,
headers: {
'access-control-allow-origin': '*',
'access-control-expose-headers': 'ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Used, X-RateLimit-Resource, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type, X-GitHub-SSO, X-GitHub-Request-Id, Deprecation, Sunset',
connection: 'close',
'content-length': '195',
'content-security-policy': "default-src 'none'",
'content-type': 'application/json; charset=utf-8',
date: 'Tue, 25 Jul 2023 22:07:32 GMT',
'referrer-policy': 'origin-when-cross-origin, strict-origin-when-cross-origin',
server: 'GitHub.com',
'strict-transport-security': 'max-age=31536000; includeSubdomains; preload',
vary: 'Accept-Encoding, Accept, X-Requested-With',
'x-content-type-options': 'nosniff',
'x-frame-options': 'deny',
'x-github-api-version-selected': '2022-11-28',
'x-github-media-type': 'github.v3; format=json',
'x-github-request-id': 'A44E:8DFF:4B61:4D91:64C047A4',
'x-ratelimit-limit': '1000',
'x-ratelimit-remaining': '995',
'x-ratelimit-reset': '1690326450',
'x-ratelimit-resource': 'core',
'x-ratelimit-used': '5',
'x-xss-protection': '0'
},
data: {
message: 'Validation Failed',
errors: [
{
resource: 'Release',
code: 'invalid',
field: 'target_commitish'
}
],
documentation_url: 'https://docs.github.com/rest/releases/releases#update-a-release'
}
},
request: {
method: 'PATCH',
url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/releases/79204730',
headers: {
accept: 'application/vnd.github.v3+json',
'user-agent': 'probot/12.2.5 octokit-core.js/3.5.1 Node.js/16.16.0 (linux; x64)',
authorization: 'token [REDACTED]',
'content-type': 'application/json; charset=utf-8'
},
body: '{"body":"<details>\\n <summary>Update decoding probability threshold @elaubsch (#69)</summary>\\n\\n This PR updates the threshold probability for barcode assignment during decoding. The new value (0.95) has been determined to yield more consistent/accurate results than the previous value (0.5) in experiments across multiple datasets.\\n</details>\\n\\n<details>\\n <summary>Add skip round functionality to spot prediction in Polaris @elaubsch (#68)</summary>\\n\\n This PR adds a check for rounds with no labeling in defined codebook. If detected, these rounds will be skipped during spot detection to prevent hallucination.\\n</details>\\n\\n<details>\\n <summary>Add gene scatter plot to results utils @elaubsch (#65)</summary>\\n\\n This PR adds an additional function `gene_scatter` to `results_utils`. This function creates a scatter plot with Plotly to visualize the location of decoded genes. It also adds some additional arguments to `expression_correlation` to offer more control over the plot appearance and input.\\n</details>\\n\\n<details>\\n <summary>Update copyright to 2023 @elaubsch (#48)</summary>\\n\\n This PR updates the copyright to 2023.\\n</details>\\n\\n<details>\\n <summary>Tighten CI configuration @rossbar (#46)</summary>\\n\\n A couple minor tweaks to the CI configuration to (hopefully) prevent duplication and unnecessary runs on experimental branches. Specifically:\\r\\n - 0ce6c0c limits CI so that runs are only triggered when either 1) a PR to `master` is opened, or 2) there is a new push to a branch from which a PR already originates. This should prevent CI from running when commits are pushed up to non-master branches.\\r\\n - 48f4bc7 adds a check which will cancel any in-progress jobs when new changes are pushed up. This can help e.g. when you push two commits up in rapid succession.
|
|
update_release_draft
HttpError: Validation Failed: {"resource":"Release","code":"invalid","field":"target_commitish"}
at /home/runner/work/_actions/release-drafter/release-drafter/v5/dist/index.js:8462:21
at processTicksAndRejections (node:internal/process/task_queues:96:5)
at async Job.doExecute (/home/runner/work/_actions/release-drafter/release-drafter/v5/dist/index.js:30793:18)
{
name: 'AggregateError',
event: {
id: '5662270705',
name: 'pull_request',
payload: {
action: 'opened',
number: 72,
organization: {
avatar_url: 'https://avatars.githubusercontent.com/u/34583715?v=4',
description: '',
events_url: 'https://api.github.com/orgs/vanvalenlab/events',
hooks_url: 'https://api.github.com/orgs/vanvalenlab/hooks',
id: 34583715,
issues_url: 'https://api.github.com/orgs/vanvalenlab/issues',
login: 'vanvalenlab',
members_url: 'https://api.github.com/orgs/vanvalenlab/members{/member}',
node_id: 'MDEyOk9yZ2FuaXphdGlvbjM0NTgzNzE1',
public_members_url: 'https://api.github.com/orgs/vanvalenlab/public_members{/member}',
repos_url: 'https://api.github.com/orgs/vanvalenlab/repos',
url: 'https://api.github.com/orgs/vanvalenlab'
},
pull_request: {
_links: {
comments: {
href: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/issues/72/comments'
},
commits: {
href: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/pulls/72/commits'
},
html: {
href: 'https://github.com/vanvalenlab/deepcell-spots/pull/72'
},
issue: {
href: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/issues/72'
},
review_comment: {
href: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/pulls/comments{/number}'
},
review_comments: {
href: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/pulls/72/comments'
},
self: {
href: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/pulls/72'
},
statuses: {
href: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/statuses/d502e6a17da75849bd57cf03e77771bbdad2e407'
}
},
active_lock_reason: null,
additions: 1914,
assignee: null,
assignees: [],
author_association: 'COLLABORATOR',
auto_merge: null,
base: {
label: 'vanvalenlab:master',
ref: 'master',
repo: {
allow_auto_merge: false,
allow_forking: false,
allow_merge_commit: false,
allow_rebase_merge: true,
allow_squash_merge: true,
allow_update_branch: true,
archive_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/{archive_format}{/ref}',
archived: false,
assignees_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/assignees{/user}',
blobs_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/git/blobs{/sha}',
branches_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/branches{/branch}',
clone_url: 'https://github.com/vanvalenlab/deepcell-spots.git',
collaborators_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/collaborators{/collaborator}',
comments_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/comments{/number}',
commits_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/commits{/sha}',
compare_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/compare/{base}...{head}',
contents_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/contents/{+path}',
contributors_url: 'https://api.github.com/repos/vanvalenlab/deepcell-spots/contributors',
created_at: '2020-05-19T04:32:12Z',
default_branch: 'master',
|