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VarFish

README.md

VarFish

VarFish is a web-based application for the comprehensive analysis of DNA variants for diagnostics and research.

Getting In Touch

Also, you can send us an email to cubi-helpdesk@bih-charite.de.

Getting Started

References

Holtgrewe, M.; Stolpe, O.; Nieminen, M.; Mundlos, S.; Knaus, A.; Kornak, U.; Seelow, D.; Segebrecht, L.; Spielmann, M.; Fischer-Zirnsak, B.; Boschann, F.; Scholl, U.; Ehmke, N.; Beule, D. VarFish: Comprehensive DNA Variant Analysis for Diagnostics and Research. Nucleic Acids Research 2020, gkaa241. https://doi.org/10.1093/nar/gkaa241.

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  1. varfish-server varfish-server Public

    VarFish: comprehensive DNA variant analysis for diagnostics and research

    Python 44 11

  2. mehari mehari Public

    VEP-like tool for sequence ontology and HGVS annotation of VCF files

    Rust 16 1

  3. varfish-docker-compose varfish-docker-compose Public

    (Next-generation; in-development) VarFish Docker Compose

    Shell

Repositories

Showing 10 of 35 repositories
  • viguno Public

    Versatile Interface for Genetics Utilization of Nice Ontologies

    varfish-org/viguno’s past year of commit activity
    Rust 0 Apache-2.0 0 2 5 Updated Dec 23, 2024
  • mehari Public

    VEP-like tool for sequence ontology and HGVS annotation of VCF files

    varfish-org/mehari’s past year of commit activity
    Rust 16 MIT 1 34 5 Updated Dec 23, 2024
  • annonars Public

    Genome annotation based on Rust and RocksDB

    varfish-org/annonars’s past year of commit activity
    Rust 7 Apache-2.0 0 19 1 Updated Dec 23, 2024
  • varfish-server-worker Public

    Rust-based background worker for varfish-server

    varfish-org/varfish-server-worker’s past year of commit activity
    Rust 2 MIT 1 2 1 Updated Dec 23, 2024
  • clinvar-this Public

    ClinVar Submission API Made Easy

    varfish-org/clinvar-this’s past year of commit activity
    Python 10 MIT 2 17 3 Updated Dec 23, 2024
  • cada-prio Public

    Re-implementation of the CADA phenotype-based prioritization algorithm

    varfish-org/cada-prio’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Dec 23, 2024
  • varfish-server Public

    VarFish: comprehensive DNA variant analysis for diagnostics and research

    varfish-org/varfish-server’s past year of commit activity
    Python 44 MIT 11 167 (1 issue needs help) 7 Updated Dec 23, 2024
  • annonars-data-clinvar Public

    Clinvar data builds for annonars

    varfish-org/annonars-data-clinvar’s past year of commit activity
    HCL 1 MIT 0 0 7 Updated Dec 16, 2024
  • clinvar-data-jsonl Public

    Weekly ClinVar releases as JSONL with additonal useful files

    varfish-org/clinvar-data-jsonl’s past year of commit activity
    1 MIT 0 0 0 Updated Dec 16, 2024
  • varfish-db-downloader Public

    Download public databases for VarFish

    varfish-org/varfish-db-downloader’s past year of commit activity
    Python 3 MIT 3 2 2 Updated Dec 11, 2024
View all repositories

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