fix: mismatched pnpm lockfile version resolution (#3611)

Fixes #3564

I created a regression when adding support for pnpm `lockfileVersion: 6`
that caused us to not include some indirect dependencies of a workspace.
A package would be missing only if a workspace had a direct dependency
on the package that was also included as an indirect dependency where
the version ranges didn't overlap. See the new test fixture for a basic
version of how this could occur.

Huge thanks to @shawnmcknight for providing a reproduction!

cli/internal/lockfile/pnpm_lockfile.go

@@ -422,16 +422,14 @@ func (p *PnpmLockfile) resolveSpecifier(workspacePath turbopath.AnchoredUnixPath
 	if err != nil {
 		return "", false, err
 	}
-	if !ok {
+	// Verify that the specifier in the importer matches the one given
+	if !ok || resolution.Specifier != specifier {
 		// Check if the specifier is already a resolved version
 		if _, ok := p.Packages[p.formatKey(name, specifier)]; ok {
 			return specifier, true, nil
 		}
 		return "", false, fmt.Errorf("Unable to find resolved version for %s@%s in %s", name, specifier, workspacePath)
 	}
-	if resolution.Specifier != specifier {
-		return "", false, nil
-	}
 	return resolution.Version, true, nil
 }
 

cli/internal/lockfile/pnpm_lockfile_test.go

@@ -277,3 +277,19 @@ func Test_LockfilePeer(t *testing.T) {
 	assert.DeepEqual(t, pkg.Version, "13.0.4(react-dom@18.2.0)(react@18.2.0)")
 	assert.DeepEqual(t, pkg.Key, "/next@13.0.4(react-dom@18.2.0)(react@18.2.0)")
 }
+
+func Test_LockfileTopLevelOverride(t *testing.T) {
+	contents, err := getFixture(t, "pnpm-top-level-dupe.yaml")
+	if err != nil {
+		t.Error(err)
+	}
+	lockfile, err := DecodePnpmLockfile(contents)
+	assert.NilError(t, err, "decode lockfile")
+
+	pkg, err := lockfile.ResolvePackage(turbopath.AnchoredUnixPath("packages/a"), "ci-info", "3.7.1")
+	assert.NilError(t, err, "resolve package")
+
+	assert.Assert(t, pkg.Found)
+	assert.DeepEqual(t, pkg.Key, "/ci-info/3.7.1")
+	assert.DeepEqual(t, pkg.Version, "3.7.1")
+}

cli/internal/lockfile/testdata/pnpm-top-level-dupe.yaml

@@ -0,0 +1,36 @@
+lockfileVersion: 5.4
+
+importers:
+  packages/a:
+    specifiers:
+      ci-info: ^2.0.0
+      is-ci: ^3.0.1
+    dependencies:
+      ci-info: 2.0.0
+      is-ci: 3.0.1
+
+packages:
+  /ci-info/2.0.0:
+    resolution:
+      {
+        integrity: sha512-5tK7EtrZ0N+OLFMthtqOj4fI2Jeb88C4CAZPu25LDVUgXJ0A3Js4PMGqrn0JU1W0Mh1/Z8wZzYPxqUrXeBboCQ==,
+      }
+    dev: false
+
+  /ci-info/3.7.1:
+    resolution:
+      {
+        integrity: sha512-4jYS4MOAaCIStSRwiuxc4B8MYhIe676yO1sYGzARnjXkWpmzZMMYxY6zu8WYWDhSuth5zhrQ1rhNSibyyvv4/w==,
+      }
+    engines: { node: ">=8" }
+    dev: false
+
+  /is-ci/3.0.1:
+    resolution:
+      {
+        integrity: sha512-ZYvCgrefwqoQ6yTyYUbQu64HsITZ3NfKX1lzaEYdkTDcfKzzCI/wthRRYKkdjHKFVgNiXKAKm65Zo1pk2as/QQ==,
+      }
+    hasBin: true
+    dependencies:
+      ci-info: 3.7.1
+    dev: false