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New Cottontail API, PolyphenyDB #224

Merged
merged 119 commits into from
Feb 7, 2022
Merged

New Cottontail API, PolyphenyDB #224

merged 119 commits into from
Feb 7, 2022

Commits on Aug 25, 2021

  1. Started implementation of Polypheny DB adapter.

    Ralph Gasser committed Aug 25, 2021
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  2. Added missing library.

    Ralph Gasser committed Aug 25, 2021
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  3. Started refactoring of data sources and configuration thereof.

    Ralph Gasser committed Aug 25, 2021
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Commits on Aug 27, 2021

  1. Added Polypheny-DB dependency as actual Maven reference.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  2. Fixed PolyphenyEntityCreator

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  3. Added missing comment.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  4. Added LOGGER field to PersistencyWriter

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  5. CottontailWriter no longer closes the CottontailWrapper.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  6. Implemented first draft of PolyphenyWriter

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  7. Fixed few issues with regards to INSERTS into Polypheny DB.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  8. Moved LOGGER field to DBSelector implementation.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  9. Fixed minor bugs.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  10. Simplified array construction in PolyphenyWriter.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  11. Started implementation of PolyphenySelector.

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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  12. Completed implementation of PolyphenySelector

    @ppanopticon
    ppanopticon committed Aug 27, 2021
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Commits on Aug 30, 2021

  1. CottontailWrapper now keeps its ManagedChannels in a pool.

    Ralph Gasser committed Aug 30, 2021
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Commits on Sep 22, 2021

  1. Made necessary adjustments to Cottontail DB client (0.13.0)

    @ppanopticon
    ppanopticon committed Sep 22, 2021
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  2. Removed superfluous import.

    @ppanopticon
    ppanopticon committed Sep 22, 2021
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  3. Merge remote-tracking branch 'origin/polyphenydb' into polyphenydb 

    # Conflicts:
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/cottontaildb/CottontailSelector.java
    @ppanopticon
    ppanopticon committed Sep 22, 2021
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  4. Fixed tow minor issues.

    Ralph Gasser committed Sep 22, 2021
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  5. Fixed an issue in CottontailSelector.getNearestNeighbourRows().

    Ralph Gasser committed Sep 22, 2021
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Commits on Sep 24, 2021

  1. Added implementation for getNearestNeighborGeneric().

    Ralph Gasser committed Sep 24, 2021
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Commits on Sep 26, 2021

  1. Fixed issues in the way queries NNS queries were formed.

    @ppanopticon
    ppanopticon committed Sep 26, 2021
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Commits on Sep 27, 2021

  1. Adjusted log levels.

    @ppanopticon
    ppanopticon committed Sep 27, 2021
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Commits on Sep 28, 2021

  1. Fixed and optimized PolyphenySelector

    Ralph Gasser committed Sep 28, 2021
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Commits on Oct 3, 2021

  1. Made adjustments to support recent API changes.

    @ppanopticon
    ppanopticon committed Oct 3, 2021
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Commits on Oct 4, 2021

  1. Merged dev.

    Ralph Gasser committed Oct 4, 2021
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  2. Fixed LDC21TemporalUpdateCommand.

    Ralph Gasser committed Oct 4, 2021
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  3. Fixed broken LSC Temporal Update

    @sauterl
    sauterl committed Oct 4, 2021
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Commits on Oct 7, 2021

  1. Added simple CLI command to benchmark Polypheny DB.

    @ppanopticon
    ppanopticon committed Oct 7, 2021
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  2. Renamed name of Cottontail DB based store.

    @ppanopticon
    ppanopticon committed Oct 7, 2021
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  3. Merge remote-tracking branch 'origin/polyphenydb' into polyphenydb 

    # Conflicts:
#	cineast-runtime/src/main/java/org/vitrivr/cineast/standalone/cli/CineastCli.java
    @ppanopticon
    ppanopticon committed Oct 7, 2021
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  4. Fixed semantic issue

    @ppanopticon
    ppanopticon committed Oct 7, 2021
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Commits on Oct 13, 2021

  1. Made some adjustments to PolyphenyBenchmarkCommand

    @ppanopticon
    ppanopticon committed Oct 13, 2021
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Commits on Oct 15, 2021

  1. Connections are now properly cleaned after execution.

    @ppanopticon
    ppanopticon committed Oct 15, 2021
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Commits on Oct 18, 2021

  1. Fixed two compilation errors.

    @ppanopticon
    ppanopticon committed Oct 18, 2021
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Commits on Oct 20, 2021

  1. Merge branch 'master' into polyphenydb

    @ppanopticon
    ppanopticon authored Oct 20, 2021
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Commits on Oct 28, 2021

  1. Merge branch 'dev' into polyphenydb

    @silvanheller
    silvanheller committed Oct 28, 2021
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  2. specifying jar version

    @silvanheller
    silvanheller committed Oct 28, 2021
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  3. removing start & endabs

    @silvanheller
    silvanheller committed Oct 28, 2021
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Commits on Oct 29, 2021

  1. Fixing temporal import for LSC

    @sauterl
    sauterl committed Oct 29, 2021
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Commits on Nov 10, 2021

  1. Bumped Polypheny Driver to 1.5.1 (maven hosted)

    @sauterl
    sauterl committed Nov 10, 2021
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  2. Merged dev into polyphenydb

    @sauterl
    sauterl committed Nov 10, 2021
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Commits on Nov 12, 2021

  1. Fixed compilation errors in tests (the're still disabled)

    @sauterl
    sauterl committed Nov 12, 2021
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  2. Added embedded cottontaildb (Tests still broken) 

    For some reason, there seems to be a race condition as any test runs
indefinitely long
    @sauterl
    sauterl committed Nov 12, 2021
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Commits on Dec 20, 2021

  1. Updated Polypheny-DB and Cottontail DB driver version.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  2. Unified signature of CottontailWrapper and PolyphenyWrapper constructor.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  3. All ADAMpro related classes have now been marked for deprecation.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  4. Removed superfluous spaces.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  5. Removed superfluous constructors.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  6. Fixed compilation error.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  7. Added todo for potential future work.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  8. Fixed two more compilation errors.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  9. Merge branch 'master' into polyphenydb

    @ppanopticon
    ppanopticon authored Dec 20, 2021
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  10. Cleanup after merge.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  11. Implemented new methods for metadat entity creation (with specific ta… 

    …ble name).
    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  12. DBSelector and PersistencyWriter now extend Closeable instead of Auto… 

    …Closeable.
    @ppanopticon
    ppanopticon committed Dec 20, 2021
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  13. Fixed compilation errors in unit tests.

    @ppanopticon
    ppanopticon committed Dec 20, 2021
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Commits on Jan 3, 2022

  1. Added missing transaction ID.

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  2. Individual terms are now explicitly ORed

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  3. Fixed type issues and disabled two tests (see TODO).

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  4. Embedded Cottontail DB is no longer started in a dedicated thread (wh… 

    …ich it doesn't need anyway).
    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  5. Separated version of Cottontail DB and Cottontail DB Proto and elevat… 

    …ed version of embedded Cottontail DB to 0.13.2-SNAPSHOT (for unit tests).
    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  6. Removed optimization, which is no longer required due to incremental … 

    …nature of indexes involved.
    @ppanopticon
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  7. Embedded database should now be shutdown properly once tests have con… 

    …cluded.
    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  8. Catalogue is now properly closed upon shutdown.

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  9. Trying to intercept errors that can occur when creating the Cottontai… 

    …lIntegrationDBProvider.
    @ppanopticon
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  10. Caching of ManagedChannels now takes state of the channel into account.

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  11. Adjusted test cases to be more in line with the Cineast API.

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  12. Removed embedded Cottontail DB.

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  13. Removed dependency on latest Cottontail DB version.

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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  14. Updated to latest Cottontail DB version (tests only).

    @ppanopticon
    ppanopticon committed Jan 3, 2022
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Commits on Jan 4, 2022

  1. Merge branch 'master' into polypheny-merge 

    # Conflicts:
#	build.gradle
#	cineast-core/src/main/java/org/vitrivr/cineast/core/config/DatabaseConfig.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/DBSelectorSupplier.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/adampro/ADAMproEntityCreator.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/adampro/ADAMproMessageBuilder.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/adampro/ADAMproSelector.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/adampro/ADAMproStreamingSelector.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/adampro/ADAMproWrapper.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/adampro/ADAMproWriter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/adampro/AbstractADAMproSelector.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/cottontaildb/CottontailEntityCreator.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/cottontaildb/CottontailWrapper.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/cottontaildb/CottontailWriter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/dao/reader/AbstractEntityReader.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/dao/writer/AbstractBatchedEntityWriter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/AverageColorRasterReduced11.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/AverageColorRasterReduced15.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/MedianColorRaster.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/STMP7EH.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/abstracts/AbstractCodebookFeatureModule.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/abstracts/AbstractFeatureModule.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/abstracts/BooleanRetriever.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/abstracts/SubDivMotionHistogram.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/AudioSegmentExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/AudioSpectogramExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/AudioWaveformExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/CENSExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/ChromagramExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/FrameExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/Model3DThumbnailExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/MotionFrameExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/MotionHistoryImageExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/QueryImageExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/RepresentativeFrameExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/ShotDescriptorExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/exporter/ShotThumbnailsExporter.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/extractor/Extractor.java
#	cineast-core/src/main/java/org/vitrivr/cineast/core/features/retriever/Retriever.java
#	cineast-runtime/src/main/java/org/vitrivr/cineast/standalone/cli/ImportCommand.java
#	cineast-runtime/src/main/java/org/vitrivr/cineast/standalone/cli/OptimizeEntitiesCommand.java
#	cineast-runtime/src/main/java/org/vitrivr/cineast/standalone/cli/db/LSC21TemporalUpdateCommand.java
#	cineast-runtime/src/main/java/org/vitrivr/cineast/standalone/config/IngestConfig.java
#	cineast-runtime/src/main/java/org/vitrivr/cineast/standalone/importer/handlers/DataImportHandler.java
#	cineast-runtime/src/main/java/org/vitrivr/cineast/standalone/importer/lsc2020/LSCUtilities.java
    @silvanheller
    silvanheller committed Jan 4, 2022
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  2. reformatting codebase

    @silvanheller
    silvanheller committed Jan 4, 2022
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  3. reformatting codebase

    @silvanheller
    silvanheller committed Jan 4, 2022
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  4. removing empty @param tags

    @silvanheller
    silvanheller committed Jan 4, 2022
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Commits on Jan 5, 2022

  1. starting polypheny-unittests

    @silvanheller
    silvanheller committed Jan 5, 2022
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  2. finalizing unittests for polypheny

    @silvanheller
    silvanheller committed Jan 5, 2022
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  3. Merge branch 'master' into polyphenydb 

    # Conflicts:
#	build.gradle
    @silvanheller
    silvanheller committed Jan 5, 2022
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Commits on Jan 6, 2022

  1. Fixed order of how PK_HINT and NULLABLE_HINT are applied during entit… 

    …y creation in PolyphenyEntityCreator.
    @ppanopticon
    ppanopticon committed Jan 6, 2022
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  2. Fixed SELECT EXISTS statement syntactically.

    @ppanopticon
    ppanopticon committed Jan 6, 2022
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  3. The PolyphenyIntegrationDBProvider now properly closes the wrapper in… 

    …volved upon closing.
    @ppanopticon
    ppanopticon committed Jan 6, 2022
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  4. Adjusted integration tests for compatibility to Polypheny DB.

    @ppanopticon
    ppanopticon committed Jan 6, 2022
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  5. Fixed syntax error in BETWEEN queries.

    @ppanopticon
    ppanopticon committed Jan 6, 2022
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  6. Fixed binding issue in PolyphenySelector.getFeatureVectors()

    @ppanopticon
    ppanopticon committed Jan 6, 2022
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Commits on Jan 24, 2022

  1. adding polypheny-vitrivr docker container for unit tests & ci

    @silvanheller
    silvanheller committed Jan 24, 2022
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  2. Merge branch 'master' into polyphenydb 

    # Conflicts:
#	build.gradle
#	cineast-core/src/main/java/org/vitrivr/cineast/core/db/cottontaildb/CottontailWrapper.java
    @silvanheller
    silvanheller committed Jan 24, 2022
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  3. updating docker container name

    @silvanheller
    silvanheller committed Jan 24, 2022
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  4. removing update for the time being

    @silvanheller
    silvanheller committed Jan 24, 2022
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  5. adjusting new feature module

    @silvanheller
    silvanheller committed Jan 24, 2022
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  6. update to postgres/polypheny connection

    @silvanheller
    silvanheller committed Jan 24, 2022
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  7. added missing -X

    @silvanheller
    silvanheller committed Jan 24, 2022
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Commits on Jan 25, 2022

  1. Fixed typo

    @ppanopticon
    ppanopticon committed Jan 25, 2022
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Commits on Jan 26, 2022

  1. Refactoring based on conversation with @lucaro: 

    - Re-introduced DBSelectorSupplier and PersistencyWriterSupplier interfaces.
- Removed batchSize from init() method of extractors and moved it to in a property of the PersistencyWriter itself.
    @ppanopticon
    ppanopticon committed Jan 26, 2022
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  2. Merge remote-tracking branch 'origin/polyphenydb' into polyphenydb

    @ppanopticon
    ppanopticon committed Jan 26, 2022
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  3. Fixed typo.

    @ppanopticon
    ppanopticon committed Jan 26, 2022
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  4. Fixed unit tests.

    @ppanopticon
    ppanopticon committed Jan 26, 2022
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  5. Renamed method to make intent clearer.

    @ppanopticon
    ppanopticon committed Jan 26, 2022
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  6. further github actions experimentation

    @silvanheller
    silvanheller committed Jan 26, 2022
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  7. spaces and tabs

    @silvanheller
    silvanheller committed Jan 26, 2022
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  8. docker options

    @silvanheller
    silvanheller committed Jan 26, 2022
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  9. trying out docker network

    @silvanheller
    silvanheller committed Jan 26, 2022
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  10. removing unneeded service containers

    @silvanheller
    silvanheller committed Jan 26, 2022
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  11. fixing payload

    @silvanheller
    silvanheller committed Jan 26, 2022
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  12. typo in yml

    @silvanheller
    silvanheller committed Jan 26, 2022
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  13. adding another test

    @silvanheller
    silvanheller committed Jan 26, 2022
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Commits on Jan 31, 2022

  1. adding logging to understand test behavior

    @silvanheller
    silvanheller committed Jan 31, 2022
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  2. adding new ci container

    @silvanheller
    silvanheller committed Jan 31, 2022
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  3. ci script updates

    @silvanheller
    silvanheller committed Jan 31, 2022
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Commits on Feb 4, 2022

  1. Fixed PolyphenyWriter.exists() for the lack of better Polypheny DB su… 

    …pport.
    @ppanopticon
    ppanopticon committed Feb 4, 2022
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  2. Implemented getRowsAND() explicitly.

    @ppanopticon
    ppanopticon committed Feb 4, 2022
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  3. Fixed textBetweenANDInQuery

    @ppanopticon
    ppanopticon committed Feb 4, 2022
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  4. Fixed issue in MetadataTest

    @ppanopticon
    ppanopticon committed Feb 4, 2022
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  5. Updated gRPC dependency for cineast-proto.

    @ppanopticon
    ppanopticon committed Feb 4, 2022
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  6. Merge remote-tracking branch 'origin/master' into polyphenydb 

    # Conflicts:
#	build.gradle
    @silvanheller
    silvanheller committed Feb 4, 2022
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  7. closing resources at least at the end, pending on the outcome of #251

    @silvanheller
    silvanheller committed Feb 4, 2022
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  8. resetting to defaults

    @silvanheller
    silvanheller committed Feb 4, 2022
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  9. removing unneeded payload, bumping cottontail version for CI

    @silvanheller
    silvanheller committed Feb 4, 2022
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Commits on Feb 7, 2022

  1. removing erroneous commented lines

    @silvanheller
    silvanheller committed Feb 7, 2022
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