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@nf-core @Mycology-Microbiology-Center @BioDT @PhyloNext @pipecraft2 @Next-ITS @GSMc-Fungi

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vmikk/README.md

๐Ÿ‘‹ Hi, I'm Vladimir Mikryukov

๐Ÿงฌ ๐Ÿ„ ๐ŸŒ I'm a molecular ecologist passionate about biodiversity and metagenomics. I work as a Research Fellow at the Institute of Ecology and Earth Sciences at the University of Tartu.

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  1. metagMisc metagMisc Public

    Miscellaneous functions for metagenomic analysis.

    R 47 11

  2. seqhasher seqhasher Public

    SeqHasher - A tool for hashing individual sequences in FASTA files

    Go 1

  3. PhyloNext PhyloNext Public

    A pipeline for phylogenetic diversity analysis of GBIF-mediated data

    R 10 1

  4. NextITS NextITS Public

    A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

    Nextflow 6

  5. BatchBlaster BatchBlaster Public

    Nextflow-based BLAST pipeline

    Nextflow 1

  6. pipecraft2/pipecraft pipecraft2/pipecraft Public

    PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines

    Shell 1 1