MATES

[laraPPr]

• link to support ticket: #2024112560000696
• website: https://github.com/mcgilldinglab/MATES
• installation docs: https://github.com/mcgilldinglab/MATES/tree/main?tab=readme-ov-file#installation
• toolchain: 2023b
• easyblock to use: PythonBundle
• required dependencies:
  • ...
• optional dependencies:
  • ...
• notes:
  • See https://github.com/easybuilders/easybuild-easyconfigs/blob/e643818c35926bdf6db7e80b2169aafe500b97aa/easybuild/easyconfigs/m/MATES/MATES-0.1.2-20240813-foss-2023a.eb
• effort: (TBD)
• other install methods
  • conda: yes (link?) / no
  • container image: yes (link?) / no
  • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
  • easyconfig outside EasyBuild: yes / no

[pavelToman]

There is no PyTorch with CUDA for 2023b now

[pavelToman]

PR:

• version without CUDA
• {bio}[foss/2023b] MATES v0.1.5-20241121, anndata v0.11.1, pybedtools v0.10.0, ... easybuilders/easybuild-easyconfigs#21919

[boegel]

There is no PyTorch with CUDA for 2023b now

see WIP PR:

• {ai}[foss/2023b] PyTorch v2.3.0 easybuilders/easybuild-easyconfigs#20489

[boegel]

I've changed the CPU-only easyconfig for MATES to use the recently released proper v0.1.5 version:

• use proper release of MATES v0.1.5 easybuilders/easybuild-easyconfigs#21998