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  1. CompareTools CompareTools Public

    R package to analyse the output of compare program

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  2. StatesThroughTimePlot StatesThroughTimePlot Public

    An R code used for plotting inferred ancestral states through time in this article: https://www.nature.com/articles/s41559-019-0834-1

  3. Agaricomycetes_species_distribution_adjustment Agaricomycetes_species_distribution_adjustment Public

    This code was used in Varga et al. 2019 (https://www.nature.com/articles/s41559-019-0834-1#Sec4): "We adjusted taxon sampling in our phylogeny by iteratively deleting species from genera that were …

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  4. TransformNewickSupport TransformNewickSupport Public

    An R script which transforms a newick treefile structure to be acceptable for the Notung program

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  5. TraitEvolution TraitEvolution Public

    Some R functions for analyze the output of ancestral state reconstruction (ASR) analyses

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  6. tgexer tgexer Public

    Tissue-specific gene expression examiner

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