Scripts for de novo genome assembly

By Yu Wan

First release: 2 June 2022

Name		Name	Last commit message	Last commit date
Latest commit History 67 Commits
modules		modules
.gitattributes		.gitattributes
LICENSE		LICENSE
README.md		README.md
add_fasta_modifiers.py		add_fasta_modifiers.py
dotplot.py		dotplot.py
estimate_read_depths.py		estimate_read_depths.py
extract_individual_sequences.py		extract_individual_sequences.py
extract_shovill_contig_stats.sh		extract_shovill_contig_stats.sh
fasta2gfa.py		fasta2gfa.py
modules.sh		modules.sh
rotateSeq.py		rotateSeq.py
run_assembly.config		run_assembly.config
run_assembly.nf		run_assembly.nf
run_flye.sh		run_flye.sh
run_miniasm_and_minipolish.sh		run_miniasm_and_minipolish.sh
run_polca.sh		run_polca.sh
run_polypolish.sh		run_polypolish.sh
run_polypolish_plus.sh		run_polypolish_plus.sh
run_quast.pbs		run_quast.pbs
run_raven.sh		run_raven.sh
trycycler_assemble_read_subsets.sh		trycycler_assemble_read_subsets.sh

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