CI #909
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# Install packages, update data, test, and archive | |
name: CI | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
schedule: | |
- cron: "0 18 * * 1,4" | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
jobs: | |
build: | |
if: contains(toJson(github.event.commits), '[skip ci]') == false | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
matrix: | |
config: | |
- {os: ubuntu-latest, r: '4.2.2', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 3 | |
- uses: r-lib/actions/setup-r@v2 | |
id: install-r | |
with: | |
r-version: ${{ matrix.config.r }} | |
- name: Cache R packages | |
uses: actions/cache@v3 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | |
restore-keys: | | |
${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | |
${{ runner.os }}- | |
- name: Install system dependencies | |
run: | | |
sudo apt-get -y update && sudo apt-get install -y \ | |
libgit2-dev libicu-dev gdal-bin proj-data proj-bin libv8-dev libprotobuf-dev protobuf-compiler \ | |
libudunits2-dev libgdal-dev libgeos-dev libproj-dev libfontconfig1-dev libjq-dev libmysqlclient-dev libpng-dev | |
# sudo add-apt-repository ppa:xapienz/curl34 | |
# sudo add-apt-repository ppa:linuxuprising/libpng12 && sudo apt-get update && sudo apt install libpng12-0 | |
sudo apt-get update | |
pip install -U pandas numpy landsatxplore | |
- name: Install packages | |
run: Rscript install-packages.R | |
- name: Update data | |
run: | | |
echo WU_API_KEY = ${{ secrets.WU_API_KEY }} >> $HOME/.Renviron | |
echo USGS_PASSWORD = ${{ secrets.USGS_PASSWORD }} >> $HOME/.Renviron | |
R -e 'readRenviron("~/.Renviron")' | |
Rscript update-data.R | |
- name: Test | |
run: Rscript testthat.R | |
- name: Check for new files | |
id: check_files | |
run: | | |
if [[ -z "$(git status --porcelain)" ]] ; then | |
echo "Git status is empty" | |
echo "diff=FALSE" >> $GITHUB_OUTPUT | |
else | |
echo "diff=TRUE" >> $GITHUB_OUTPUT | |
fi | |
- name: Bump version | |
id: version | |
env: | |
LOG: ${{ github.event_name == 'pull_request' && '$(git log --no-merges --format=%B -n 1 HEAD^2)' || '$(git log --no-merges --format=%B -n 1 HEAD)' }} | |
CRON: ${{ github.event_name == 'schedule' && 'TRUE' || 'FALSE' }} | |
run: | | |
R -e "source('version_bump.R'); bump_version('${{ env.LOG }}', ${{ env.CRON }}, ${{ steps.check_files.outputs.diff }})" | |
if echo "$(git status --porcelain)" | grep -q version.txt ; then | |
echo "Version changed" | |
echo "new_ver=TRUE" >> $GITHUB_OUTPUT | |
else | |
echo "No version bump" | |
echo "new_ver=FALSE" >> $GITHUB_OUTPUT | |
fi | |
- name: Setup Tag | |
if: github.event_name != 'pull_request' && steps.version.outputs.new_ver == 'TRUE' | |
id: tagging | |
run: | | |
value=`cat version.txt` | |
echo "tag=$value" >> $GITHUB_OUTPUT | |
value="v${value}" | |
echo "release=$value" >> $GITHUB_OUTPUT | |
- name: Tag new version for release | |
if: github.event_name != 'pull_request' && steps.version.outputs.new_ver == 'TRUE' | |
env: | |
JOB_TAGS: ${{ github.event_name == 'schedule' && '[skip ci] [cron]' || '[skip ci]' }} | |
uses: EndBug/add-and-commit@v9 | |
with: | |
author_name: Weecology Deploy Bot | |
author_email: weecologydeploy@weecology.org | |
message: "Update data and trigger archive: GitHub Build ${{ github.run_number }} ${{ env.JOB_TAGS }}" | |
tag: ${{ steps.tagging.outputs.tag }} | |
- name: Create Release | |
if: github.event_name != 'pull_request' && steps.version.outputs.new_ver == 'TRUE' | |
id: create_release | |
uses: zendesk/action-create-release@v1 | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
tag_name: ${{ steps.tagging.outputs.tag }} | |
release_name: ${{ steps.tagging.outputs.tag }} | |
body: ${{ steps.tagging.outputs.release }} |