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CI #915

Workflow file for this run

# Install packages, update data, test, and archive
name: CI
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
schedule:
- cron: "0 18 * * 1,4"
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
jobs:
build:
if: contains(toJson(github.event.commits), '[skip ci]') == false
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
matrix:
config:
- {os: ubuntu-latest, r: '4.2.2', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 3
- uses: r-lib/actions/setup-r@v2
id: install-r
with:
r-version: ${{ matrix.config.r }}
- name: Cache R packages
uses: actions/cache@v3
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-
restore-keys: |
${{ runner.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-
${{ runner.os }}-
- name: Install system dependencies
run: |
sudo apt-get -y update && sudo apt-get install -y \
libgit2-dev libicu-dev gdal-bin proj-data proj-bin libv8-dev libprotobuf-dev protobuf-compiler \
libudunits2-dev libgdal-dev libgeos-dev libproj-dev libfontconfig1-dev libjq-dev libmysqlclient-dev libpng-dev
# sudo add-apt-repository ppa:xapienz/curl34
# sudo add-apt-repository ppa:linuxuprising/libpng12 && sudo apt-get update && sudo apt install libpng12-0
sudo apt-get update
pip install -U pandas numpy landsatxplore
- name: Install packages
run: Rscript install-packages.R
- name: Update data
run: |
echo WU_API_KEY = ${{ secrets.WU_API_KEY }} >> $HOME/.Renviron
echo USGS_PASSWORD = ${{ secrets.USGS_PASSWORD }} >> $HOME/.Renviron
R -e 'readRenviron("~/.Renviron")'
Rscript update-data.R
- name: Test
run: Rscript testthat.R
- name: Check for new files
id: check_files
run: |
if [[ -z "$(git status --porcelain)" ]] ; then
echo "Git status is empty"
echo "diff=FALSE" >> $GITHUB_OUTPUT
else
echo "diff=TRUE" >> $GITHUB_OUTPUT
fi
- name: Bump version
id: version
env:
LOG: ${{ github.event_name == 'pull_request' && '$(git log --no-merges --format=%B -n 1 HEAD^2)' || '$(git log --no-merges --format=%B -n 1 HEAD)' }}
CRON: ${{ github.event_name == 'schedule' && 'TRUE' || 'FALSE' }}
run: |
R -e "source('version_bump.R'); bump_version('${{ env.LOG }}', ${{ env.CRON }}, ${{ steps.check_files.outputs.diff }})"
if echo "$(git status --porcelain)" | grep -q version.txt ; then
echo "Version changed"
echo "new_ver=TRUE" >> $GITHUB_OUTPUT
else
echo "No version bump"
echo "new_ver=FALSE" >> $GITHUB_OUTPUT
fi
- name: Setup Tag
if: github.event_name != 'pull_request' && steps.version.outputs.new_ver == 'TRUE'
id: tagging
run: |
value=`cat version.txt`
echo "tag=$value" >> $GITHUB_OUTPUT
value="v${value}"
echo "release=$value" >> $GITHUB_OUTPUT
- name: Tag new version for release
if: github.event_name != 'pull_request' && steps.version.outputs.new_ver == 'TRUE'
env:
JOB_TAGS: ${{ github.event_name == 'schedule' && '[skip ci] [cron]' || '[skip ci]' }}
uses: EndBug/add-and-commit@v9
with:
author_name: Weecology Deploy Bot
author_email: weecologydeploy@weecology.org
message: "Update data and trigger archive: GitHub Build ${{ github.run_number }} ${{ env.JOB_TAGS }}"
tag: ${{ steps.tagging.outputs.tag }}
- name: Create Release
if: github.event_name != 'pull_request' && steps.version.outputs.new_ver == 'TRUE'
id: create_release
uses: zendesk/action-create-release@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
tag_name: ${{ steps.tagging.outputs.tag }}
release_name: ${{ steps.tagging.outputs.tag }}
body: ${{ steps.tagging.outputs.release }}