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Artery_Tibial_Artery_Aorta_enrichment.R
Artery_Tibial_Artery_Aorta_enrichment.R
 
 
Artery_Tibial_Artery_Aorta_enrichment.qsub
Artery_Tibial_Artery_Aorta_enrichment.qsub
 
 
Artery_Tibial_Artery_Aorta_enrichment.sh
Artery_Tibial_Artery_Aorta_enrichment.sh
 
 
GTeX_bagging_arg.py
GTeX_bagging_arg.py
 
 
GTeX_bagging_arg.qsub
GTeX_bagging_arg.qsub
 
 
GTeX_bagging_arg.sh
GTeX_bagging_arg.sh
 
 
GTeX_data_preprocess
GTeX_data_preprocess
 
 
GTeX_eQTL_process.qsub
GTeX_eQTL_process.qsub
 
 
GTeX_eQTL_process.sh
GTeX_eQTL_process.sh
 
 
GWAS_enrichment.py
GWAS_enrichment.py
 
 
GWAS_enrichment_with_eQTL.R
GWAS_enrichment_with_eQTL.R
 
 
GWAS_enrichment_with_eQTL.qsub
GWAS_enrichment_with_eQTL.qsub
 
 
GWAS_enrichment_with_eQTL.sh
GWAS_enrichment_with_eQTL.sh
 
 
README.md
README.md
 
 
Skin_exposed_non_exposed_enrichment.R
Skin_exposed_non_exposed_enrichment.R
 
 
Skin_exposed_non_exposed_enrichment.qsub
Skin_exposed_non_exposed_enrichment.qsub
 
 
Skin_exposed_non_exposed_enrichment.sh
Skin_exposed_non_exposed_enrichment.sh
 
 
baggingSNPsByLD.py
baggingSNPsByLD.py
 
 
esophagus_muscularis_esophagus_mucosa_enrichment.R
esophagus_muscularis_esophagus_mucosa_enrichment.R
 
 
esophagus_muscularis_esophagus_mucosa_enrichment.qsub
esophagus_muscularis_esophagus_mucosa_enrichment.qsub
 
 
esophagus_muscularis_esophagus_mucosa_enrichment.sh
esophagus_muscularis_esophagus_mucosa_enrichment.sh
 
 
hypergeometric_test_after_bagging.R
hypergeometric_test_after_bagging.R
 
 
hypergeometric_test_after_bagging.R.backup
hypergeometric_test_after_bagging.R.backup
 
 
hypergeometric_test_after_bagging.function.R
hypergeometric_test_after_bagging.function.R
 
 
hypergeometric_test_after_bagging_112916.R
hypergeometric_test_after_bagging_112916.R
 
 
hypergeometric_test_after_bagging_wcc.R
hypergeometric_test_after_bagging_wcc.R
 
 
log.sh
log.sh
 
 
osteo_bagging.py
osteo_bagging.py
 
 
osteo_bagging.qsub
osteo_bagging.qsub
 
 
osteo_bagging.sh
osteo_bagging.sh
 
 
osteo_enrichment.R
osteo_enrichment.R
 
 
osteo_enrichment.qsub
osteo_enrichment.qsub
 
 
osteo_enrichment.sh
osteo_enrichment.sh
 
 
preprocess.qsub
preprocess.qsub
 
 
preprocess.sh
preprocess.sh
 
 
renew_hypergeo.R
renew_hypergeo.R
 
 
selectedEnrichment.R
selectedEnrichment.R
 
 
selectedEnrichment.png
selectedEnrichment.png
 
 
selectedEnrichment.txt
selectedEnrichment.txt
 
 
selectedEnrichment.xlsx
selectedEnrichment.xlsx
 
 
shell.log.sh
shell.log.sh
 
 
test110216.2.txt
test110216.2.txt
 
 
test110216.txt
test110216.txt
 
 

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  1. Assign eQTL SNPs in different Linkage Disequilibrium (LD) blocks by specific r square cut-off
  2. Conduct Hypermetric Test for eQTL in different GWAS bins

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