added timsTOF model to supported models

wilhelm-lab · Jan 31, 2024 · a8dcd10 · a8dcd10
1 parent 102c2b8
commit a8dcd10
Showing 1 changed file with 13 additions and 11 deletions.
diff --git a/docs/predictions.rst b/docs/predictions.rst
@@ -26,17 +26,19 @@ This is the list of currently supported and tested models for Oktoberfest provid
 .. table::
    :class: fixed-table
 
-   +----------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
-   | Intensity models                                                                                         |                             Description                                                                                                                                                      |
-   +==========================================================================================================+==============================================================================================================================================================================================+
-   | Prosit_2019_intensity                                                                                    | Developed for HCD tryptic peptides only. We recommend using the Prosit_2020_intensity_HCD model instead, since it showed slightly superior performance on tryptic peptides as well.          |
-   +----------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
-   | `Prosit_2020_intensity_HCD <https://koina.proteomicsdb.org/docs#post-/Prosit_2020_intensity_HCD/infer>`_ | Developed for HCD tryptic and non-tryptic peptides. Supported modifications are oxidation and carbamidomethylation. Latest version we recommend to use for HCD.                              |
-   +----------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
-   | `Prosit_2020_intensity_CID <https://koina.proteomicsdb.org/docs#post-/Prosit_2020_intensity_CID/infer>`_ | Developed for CID tryptic and non-tryptic peptides. Supported modifications are oxidation and carbamidomethylation. Latest version we recommend to use for CID.                              |
-   +----------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
-   | `Prosit_2020_intensity_TMT <https://koina.proteomicsdb.org/docs#post-/Prosit_2020_intensity_TMT/infer>`_ | Developed for HCD and CID, tryptic and non-tryptic peptides. Latest version we commend for TMT labeled peptides in general.                                                                  |
-   +----------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   +------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   | Intensity models                                                                                                 |                             Description                                                                                                                                                      |
+   +==================================================================================================================+==============================================================================================================================================================================================+
+   | Prosit_2019_intensity                                                                                            | Developed for HCD tryptic peptides only. We recommend using the Prosit_2020_intensity_HCD model instead, since it showed slightly superior performance on tryptic peptides as well.          |
+   +------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   | `Prosit_2020_intensity_HCD <https://koina.proteomicsdb.org/docs#post-/Prosit_2020_intensity_HCD/infer>`_         | Developed for HCD tryptic and non-tryptic peptides. Supported modifications are oxidation and carbamidomethylation. Latest version we recommend to use for HCD.                              |
+   +------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   | `Prosit_2020_intensity_CID <https://koina.proteomicsdb.org/docs#post-/Prosit_2020_intensity_CID/infer>`_         | Developed for CID tryptic and non-tryptic peptides. Supported modifications are oxidation and carbamidomethylation. Latest version we recommend to use for CID.                              |
+   +------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   | `Prosit_2020_intensity_TMT <https://koina.proteomicsdb.org/docs#post-/Prosit_2020_intensity_TMT/infer>`_         | Developed for HCD and CID, tryptic and non-tryptic peptides. Latest version we commend for TMT labeled peptides in general.                                                                  |
+   +------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   | `Prosit_2023_intensity_timsTOF <https://koina.proteomicsdb.org/docs#post-/Prosit_2023_intensity_timsTOF/infer>`_ | Developed for timsTOF, tryptic and non-tryptic peptides. Latest version we commend to use for timsTOF.                                                                                       |
+   +------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
 
 .. table::
    :class: fixed-table