SGE Grid engine parsing

Table of contents

• sge_tools.py - Function to convert existing qacct output to a pandas dataframe
• example_usage.py - An example usage script plot
• qacct_output.txt - Example qacct output file (use "qacct -j" to generate it)

Dependencies

The functions have the following dependencies. In brackets the versions of the tested versions have been added

• python (3.6.6)
• pandas (0.23.4)
• matplotlib (2.3.3)

Further reading

[1] https://gist.github.com/SamStudio8/7f2edcfda17906e3941b

[2] http://manpages.ubuntu.com/manpages/cosmic/en/man5/sge_accounting.5.html

[3] http://www.colbyimaging.com/wiki/neuroimaging/tbss