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Add grid_mapping for geometries if possible #521

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58 changes: 49 additions & 9 deletions cf_xarray/geometry.py
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,19 @@
]


# Useful convention language:
# 1. Whether linked to normal CF space-time coordinates with a nodes attribute or not, inclusion of such coordinates is
# recommended to maintain backward compatibility with software that has not implemented geometry capabilities.
# 2. The geometry node coordinate variables must each have an axis attribute whose allowable values are X, Y, and Z.
# 3. If a coordinates attribute is carried by the geometry container variable or its parent data variable, then those coordinate variables
# that have a meaningful correspondence with node coordinates are indicated as such by a nodes attribute that names the corresponding node
# coordinates, but only if the grid_mapping associated the geometry node variables is the same as that of the coordinate variables.
# If a different grid mapping is used, then the provided coordinates must not have the nodes attribute.
#
# Interpretation:
# 1. node coordinates are exact; the 'normal' coordinates are a reasonable value to use, if you do not know how to interpret the nodes.


def decode_geometries(encoded: xr.Dataset) -> xr.Dataset:
"""
Decode CF encoded geometries to a numpy object array containing shapely geometries.
Expand Down Expand Up @@ -282,6 +295,14 @@ def shapely_to_cf(geometries: xr.DataArray | Sequence, grid_mapping: str | None
----------
Please refer to the CF conventions document: http://cfconventions.org/Data/cf-conventions/cf-conventions-1.8/cf-conventions.html#geometries
"""

if isinstance(geometries, xr.DataArray) and grid_mapping is not None:
raise DeprecationWarning(
"Explicitly passing `grid_mapping` with DataArray of geometries is deprecated. "
"Please set a `grid_mapping` attribute on `geometries`, ",
"and set the grid mapping variable as a coordinate",
)

# Get all types to call the appropriate translation function.
types = {
geom.item().geom_type if isinstance(geom, xr.DataArray) else geom.geom_type
Expand All @@ -300,19 +321,38 @@ def shapely_to_cf(geometries: xr.DataArray | Sequence, grid_mapping: str | None

ds[GEOMETRY_CONTAINER_NAME].attrs.update(coordinates="crd_x crd_y")

if (
grid_mapping is None
and isinstance(geometries, xr.DataArray)
and (grid_mapping_varname := geometries.attrs.get("grid_mapping"))
):
if grid_mapping_varname in geometries.coords:
grid_mapping = geometries.coords[grid_mapping_varname].attrs[
"grid_mapping_name"
]
for name_ in ["x", "y", "crd_x", "crd_y"]:
ds[name_].attrs["grid_mapping"] = grid_mapping_varname

# Special treatment of selected grid mappings
if grid_mapping == "longitude_latitude":
# Special case for longitude_latitude grid mapping
if grid_mapping in ["latitude_longitude", "rotated_latitude_longitude"]:
# Special case for longitude_latitude type grid mappings
ds = ds.rename(crd_x="lon", crd_y="lat")
ds.lon.attrs.update(units="degrees_east", standard_name="longitude")
ds.lat.attrs.update(units="degrees_north", standard_name="latitude")
if grid_mapping == "latitude_longitude":
ds.lon.attrs.update(units="degrees_east", standard_name="longitude")
ds.x.attrs.update(units="degrees_east", standard_name="longitude")
ds.lat.attrs.update(units="degrees_north", standard_name="latitude")
ds.y.attrs.update(units="degrees_north", standard_name="latitude")
elif grid_mapping == "rotated_latitude_longitude":
ds.lon.attrs.update(units="degrees", standard_name="grid_longitude")
ds.x.attrs.update(units="degrees", standard_name="grid_longitude")
ds.lat.attrs.update(units="degrees", standard_name="grid_latitude")
ds.y.attrs.update(units="degrees", standard_name="grid_latitude")
ds[GEOMETRY_CONTAINER_NAME].attrs.update(coordinates="lon lat")
ds.x.attrs.update(units="degrees_east", standard_name="longitude")
ds.y.attrs.update(units="degrees_north", standard_name="latitude")
elif grid_mapping is not None:
raise NotImplementedError(
f"Only grid mapping longitude_latitude is implemented. Got {grid_mapping}."
)
ds.crd_x.attrs.update(standard_name="projection_x_coordinate")
ds.x.attrs.update(standard_name="projection_x_coordinate")
ds.crd_y.attrs.update(standard_name="projection_y_coordinate")
ds.y.attrs.update(standard_name="projection_y_coordinate")

return ds

Expand Down
14 changes: 7 additions & 7 deletions cf_xarray/tests/test_geometry.py
Original file line number Diff line number Diff line change
Expand Up @@ -265,8 +265,8 @@ def test_shapely_to_cf(geometry_ds):
[
in_ds.drop_vars("geometry").isel(index=slice(1, None)),
cfxr.shapely_to_cf(
in_ds.geometry.isel(index=slice(1, None)),
grid_mapping="longitude_latitude",
in_ds.geometry.isel(index=slice(1, None)).data,
grid_mapping="latitude_longitude",
),
]
)
Expand Down Expand Up @@ -355,10 +355,11 @@ def test_shapely_to_cf_errors():
with pytest.raises(ValueError, match="Mixed geometry types are not supported"):
cfxr.shapely_to_cf(geoms)

with pytest.raises(
NotImplementedError, match="Only grid mapping longitude_latitude"
):
cfxr.shapely_to_cf([Point(4, 5)], grid_mapping="albers_conical_equal_area")
encoded = cfxr.shapely_to_cf(
[Point(4, 5)], grid_mapping="albers_conical_equal_area"
)
assert encoded["x"].attrs["standard_name"] == "projection_x_coordinate"
assert encoded["y"].attrs["standard_name"] == "projection_y_coordinate"


@requires_shapely
Expand Down Expand Up @@ -491,7 +492,6 @@ def test_reshape_unique_geometries(geometry_ds):

@requires_shapely
def test_encode_decode(geometry_ds, polygon_geometry):

geom_dim_ds = xr.Dataset()
geom_dim_ds = geom_dim_ds.assign_coords(
xr.Coordinates(
Expand Down
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