Avoid explicit np.nan, np.inf #1954
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI Additional | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "*" | |
| workflow_dispatch: # allows you to trigger manually | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect ci trigger | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'xarray-contrib/flox' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/ci-trigger@v1.2 | |
| id: detect-trigger | |
| with: | |
| keyword: "[skip-ci]" | |
| doctest: | |
| name: Doctests | |
| runs-on: "ubuntu-latest" | |
| needs: detect-ci-trigger | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| CONDA_ENV_FILE: ci/environment.yml | |
| PYTHON_VERSION: "3.12" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: set environment variables | |
| run: | | |
| echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{env.CONDA_ENV_FILE}} | |
| environment-name: flox-tests | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: | | |
| python=${{ env.PYTHON_VERSION }} | |
| - name: Install flox | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Run doctests | |
| run: | | |
| python -m pytest --doctest-modules \ | |
| flox/aggregations.py flox/core.py flox/xarray.py \ | |
| --ignore flox/tests \ | |
| --cov=./ --cov-report=xml | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v4.5.0 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| mypy: | |
| name: Mypy | |
| runs-on: "ubuntu-latest" | |
| needs: detect-ci-trigger | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| CONDA_ENV_FILE: ci/environment.yml | |
| PYTHON_VERSION: "3.12" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: set environment variables | |
| run: | | |
| echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{env.CONDA_ENV_FILE}} | |
| environment-name: flox-tests | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: | | |
| python=${{ env.PYTHON_VERSION }} | |
| - name: Install flox | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Install mypy | |
| run: | | |
| python -m pip install mypy | |
| - name: Run mypy | |
| run: | | |
| mkdir .mypy_cache | |
| python -m mypy --install-types --non-interactive --cache-dir=.mypy_cache/ --cobertura-xml-report mypy_report | |
| - name: Upload mypy coverage to Codecov | |
| uses: codecov/codecov-action@v4.5.0 | |
| with: | |
| file: mypy_report/cobertura.xml | |
| flags: mypy | |
| env_vars: PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false |