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#three in memory sorted dict comparation

1. skip list
   • compilation

   gcc -g -O3 -Wall -Wno-unused-function skiplist_kseq.c  -o skiplist_kseq -I./skiplist -lz
   

   • command line

   ./skiplist_kseq ~/data/TS11N_L1_R1.fastq.gz.1000000.gz > fastq
   

2. STL map
   • compilation

   g++ -g -O3 -Wall map_kseq.cpp -o map_kseq  -lz
   

   • command line

   ./map_kseq ~/data/TS11N_L1_R1.fastq.gz.1000000.gz > fastq
   

3. btree
   • compilation

   gcc -g -O3 -Wall kbtree_kseq.c -o kbtree_kseq -lz
   

   • commnad line

   ./kbtree_kseq ~/data/TS11N_L1_R1.fastq.gz.1000000.gz >fastq