Bioinformatics tools

• bio-fusion: High-performance RNA/DNA fusion detector

Infrastructure libraries

• encoding/bamprovider: Parallel BAM/PAM reader and parallel paired reader.
• encoding/fasta: FASTA reader and writer.
• encoding/fastq: FASTQ reader
• encoding/pam: A faster, smaller alternative to BAM files.
• encoding/bam: Utilities for BAM files. Based on github.com/biogo/hts.
• encoding/converter: Conversion between file formats
• cmd/bio-pamtool: "samtool" like tool for PAM and BAM.
• cmd/bio-bam-sort: Tool for sorting and merging aligner outputs into PAM or BAM.
• cmd/bio-bam-gindex: Alternate index for faster seeking into BAM files.
• cmd/bio-pileup: Tool to support variant calling on PAM or BAM.
• biosimd: Fast reverse-complement, pack/unpack from BAM seq[] format, etc.