Skip to content

Bioconductor Release 3.16

Latest
Latest
Compare
Choose a tag to compare
@zhengxwen zhengxwen released this 05 Nov 05:53
· 72 commits to master since this release
v1.38.0
c0c796a

CHANGES IN VERSION 1.38.0

UTILITIES

  • new option 'ext_nbyte' in seqGet2bGeno()
  • seqAlleleCount() and seqGetAF_AC_Missing() return NA instead of zero when all genotypes are missing at a site
  • seqGDS2VCF() does not output the FORMAT column if there is no selected sample (e.g., site-only VCF files)
  • seqGetData(, "$chrom_pos2") is similar to seqGetData(, "$chrom_pos") except the duplicates with the suffix ("_1", "_2" or >2)

NEW FEATURES

  • seqGDS2BED() can convert to PLINK BED files with the best-guess genotypes when there are only numeric dosages in the GDS file
  • seqEmptyFile() outputs an empty GDS file
Assets 2
Loading