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#790 Part2: adding Fusion based subtyping for LGAT #843

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#790 Part2: adding Fusion based subtyping for LGAT #843

wants to merge 35 commits into from

Commits on Nov 16, 2020

  1. adding new SNV subtypes for LGAT

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  2. adding LGAT updated rna fusion based subtyping

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  3. adding additional subtypes

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  4. re-doing subtyping so removing the last step for now

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  5. updating run_subtyping.sh

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  6. updating run_subtyping.sh

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  7. removing subtyping list

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  8. removing subtyping list

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  9. run Fus subtyping

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  10. removing subtyping list

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  11. adding fusion and fused genes per subtype

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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Commits on Nov 17, 2020

  1. update README

    @kgaonkar6
    kgaonkar6 committed Nov 17, 2020
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  2. Merge branch 'master' into lgat_add_subtyping_SNV

    @kgaonkar6
    kgaonkar6 authored Nov 17, 2020
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  3. Merge branch 'master' into lgat_add_subtyping_Fus

    @kgaonkar6
    kgaonkar6 authored Nov 17, 2020
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  4. adding changes from 842

    @kgaonkar6
    kgaonkar6 committed Nov 17, 2020
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  5. Merge branch 'lgat_add_subtyping_Fus' of https://github.com/kgaonkar6… 

    …/OpenPBTA-analysis into lgat_add_subtyping_Fus
    @kgaonkar6
    kgaonkar6 committed Nov 17, 2020
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  6. update README

    @kgaonkar6
    kgaonkar6 committed Nov 17, 2020
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  7. edit to comment

    @kgaonkar6
    kgaonkar6 committed Nov 17, 2020
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  8. rename variable to mention rna

    @kgaonkar6
    kgaonkar6 committed Nov 17, 2020
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Commits on Nov 19, 2020

  1. changed to nb

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  2. Merge branch 'lgat_add_subtyping_SNV' of https://github.com/kgaonkar6… 

    …/OpenPBTA-analysis into lgat_add_subtyping_SNV
    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  3. remove Rscript

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  4. Update README.md

    @kgaonkar6
    kgaonkar6 authored Nov 19, 2020
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  5. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    Co-authored-by: Jo Lynne Rokita <jharenza@gmail.com>
    @kgaonkar6 @jharenza
    kgaonkar6 and jharenza authored Nov 19, 2020
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  6. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    Co-authored-by: Jo Lynne Rokita <jharenza@gmail.com>
    @kgaonkar6 @jharenza
    kgaonkar6 and jharenza authored Nov 19, 2020
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  7. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    Co-authored-by: Jo Lynne Rokita <jharenza@gmail.com>
    @kgaonkar6 @jharenza
    kgaonkar6 and jharenza authored Nov 19, 2020
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  8. adding comments remove silent snv

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  9. adding sample_id

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  10. adding H3F3B

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  11. updates to files

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  12. Merge branch 'master' into lgat_add_subtyping_SNV

    @kgaonkar6
    kgaonkar6 authored Nov 19, 2020
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Commits on Nov 20, 2020

  1. Merge branch 'master' into lgat_add_subtyping_Fus

    @kgaonkar6
    kgaonkar6 authored Nov 20, 2020
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  2. changes from part1

    @kgaonkar6
    kgaonkar6 committed Nov 20, 2020
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  3. Merge branch 'lgat_add_subtyping_Fus' of https://github.com/kgaonkar6… 

    …/OpenPBTA-analysis into lgat_add_subtyping_Fus
    @kgaonkar6
    kgaonkar6 committed Nov 20, 2020
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  4. R to nb

    @kgaonkar6
    kgaonkar6 committed Nov 20, 2020
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